Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., Regulatory protein AtoC from Azospirillum sp. SherDot2

 Score =  274 bits (701), Expect = 4e-78
 Identities = 170/466 (36%), Positives = 256/466 (54%), Gaps = 17/466 (3%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIE 76
           +VL+VDD+  ++ +L   L++    V  A+   EA        + ++++D+ +P  +G++
Sbjct: 15  AVLVVDDDEAIREMLAAVLTRDGLSVTTAADGVEAVAAFAAQRHAVVLMDVRMPRMTGLQ 74

Query: 77  WEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLN 136
                   D    VI MT +A++  A+ A+K GA D+++KPF++ ++L  V R +  R  
Sbjct: 75  ALAEIRKLDRSTAVILMTAYAEVGAAVQAIKDGAFDYVIKPFDIAEILLQVGRALQMRRM 134

Query: 137 ERLQYALQRDFQR-HCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARG 195
                 L R+    + T +I+ +S +   L Q I + A S A+VL+ GESGTGKELVA  
Sbjct: 135 RDDIATLHRELSSSYRTDRILTASPRMSELLQTIAKVAKSNATVLVTGESGTGKELVAAA 194

Query: 196 IHEASGRQ-GPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDE 254
           IH  S R  GPFV +NC A+   LLESE FGH  GAFTGA+  R G F  A  GTLFLDE
Sbjct: 195 IHYNSPRNAGPFVKVNCAAVPEGLLESEFFGHERGAFTGAQARRRGRFEQAEHGTLFLDE 254

Query: 255 IGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYR 314
           IG++  ++Q  LLRVL++R    VG  + V  DVRV+ ATNRNL++ V  G FR DLY+R
Sbjct: 255 IGDISPSLQVKLLRVLQEREFERVGGAELVRTDVRVIVATNRNLEEMVRQGLFRQDLYFR 314

Query: 315 LNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIREL 374
           LNV+ +   PLRER +D+  L   F +   AE  + +     + +  +  Y WPGNIREL
Sbjct: 315 LNVVTLRTVPLRERPEDVRLLASHFLQRFAAENRIDVSGIDEQAMERLLAYRWPGNIREL 374

Query: 375 KNLIERCLLLGKPPAHYWRELNGLPIYAE--PEVTMSQSNNSEISL---GDNVTQPSLGY 429
            N +ER +++            G  I  E  PE    ++ +SE +     D    PS   
Sbjct: 375 SNAMERAVVMS----------TGAMIVTEDLPEQIAGRAGDSEPATDTDSDGAAAPSAAG 424

Query: 430 PNDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475
                +S  E   +   +A ++GN+   A+ LG++R++L  K +E+
Sbjct: 425 SLREQVSRFEARVVADALARNDGNRMKTAQQLGISRRSLLYKLQEY 470