Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., two component response regulator for C4-dicarboxylate transport from Agrobacterium fabrum C58

 Score =  266 bits (679), Expect = 1e-75
 Identities = 167/458 (36%), Positives = 243/458 (53%), Gaps = 29/458 (6%)

Query: 17  SVLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIE 76
           ++ LVDD+  ++  + + L      V   S  E+A     E    ++I D+ +PG +G+E
Sbjct: 6   TIFLVDDDSQLRKAMVQTLELDGLPVTSFSRAEQALAALNEDFDGIIITDVRMPGMTGLE 65

Query: 77  WEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMNKRLN 136
           + +     D    VI +TG  D+  A+ AL  GA DFI KPF  E+M+++ +R + KR  
Sbjct: 66  FFDHVRKIDADLPVILITGHGDVPMAVDALHNGAYDFIAKPFPAERMVESARRALEKRRL 125

Query: 137 ERLQYALQRDF-QRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARG 195
                AL+R   Q      +IG +   E L+  +   A +   VL+ GE+G+GKE+VA  
Sbjct: 126 VLENRALRRAAGQAEDDLPLIGQTPAMERLRTTLRHIADTDVDVLVAGETGSGKEVVATA 185

Query: 196 IHEASGRQ--GPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLD 253
           +H  S ++  G FV +NCGA+   ++ESELFGH  GAFTGA+K R G    ++GGTLFLD
Sbjct: 186 LHRWSKKRSKGNFVALNCGALPETVIESELFGHEPGAFTGAQKKRVGRIEHSSGGTLFLD 245

Query: 254 EIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYY 313
           EI  MPL +Q  +LRVLE R V P+GS +E  VD+RVVAA   +L    E G FR DLYY
Sbjct: 246 EIESMPLAVQVKMLRVLEMREVSPLGSNEERPVDIRVVAAAKVDLGDPAERGTFREDLYY 305

Query: 314 RLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIRE 373
           RLNV+ + + PLRERK D+  L   F         MP+P+ +      +QD+DWPGN+RE
Sbjct: 306 RLNVVTLSIPPLRERKADIPLLFSHFVTKAANRFNMPVPQISAGTSRRLQDHDWPGNVRE 365

Query: 374 LKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEISLGDNVTQPSLGYPNDW 433
           L +  ER +L             GL    E E   + ++ S I     + +         
Sbjct: 366 LGHFAERVVL-------------GL----EAEPAAAPTSQSAIPASGTLPE--------- 399

Query: 434 PLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERK 471
            +  +E   I++ +    G+ +     LG+ARKT   K
Sbjct: 400 RMDEIEAHIIRETLERSNGDVAETIATLGIARKTFYDK 437