Pairwise Alignments

Query, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., Regulatory protein AtoC from Acinetobacter radioresistens SK82

 Score =  288 bits (738), Expect = 2e-82
 Identities = 168/466 (36%), Positives = 273/466 (58%), Gaps = 17/466 (3%)

Query: 18  VLLVDDEVGMQLVLKKALSKWFSRVDLASSIEEAEVLRGEHHYDLLILDINLPGRSGIEW 77
           +LLVDDE  +  +++ +L+K   R  +A  +E+A+ L  +H YD  + D+NLP  +G+E 
Sbjct: 8   ILLVDDEEDLCTLMQMSLAKINIRTHIAHGLEQAKKLFQQHAYDACLTDLNLPDGNGLEL 67

Query: 78  EEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAVQRCMN--KRL 135
            +  +       +  +T + ++E AISALK GA DF+ KP N   + Q VQ+ +N  +  
Sbjct: 68  VQYVSQLYPCTPIAVLTAYGNMEIAISALKAGAFDFVSKPVNQAHLQQLVQKALNTPQSA 127

Query: 136 NERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAPSRASVLIEGESGTGKELVARG 195
            + +Q AL+          +IG+S+  + LK  + + A S+A V I GESGTGKE+VA  
Sbjct: 128 QQLVQDALEN-------RMLIGTSLPIQQLKIALKKIARSQAPVFITGESGTGKEVVANL 180

Query: 196 IHEASGRQ-GPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLFRVANGGTLFLDE 254
           +H  S R  GPF+ INCGAI  +L+ESELFGH  G+FTGA + ++GL   A+GG+LFLDE
Sbjct: 181 VHRLSNRSDGPFIAINCGAIPSDLMESELFGHKKGSFTGASQDKQGLIYSAHGGSLFLDE 240

Query: 255 IGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEVENGRFRGDLYYR 314
           I E+PL MQ  LLR ++++ +RP+GS++E++VD RV++A++++L+  V+ G+FR DL++R
Sbjct: 241 IAELPLAMQVKLLRAVQEKKIRPIGSDQEIDVDFRVISASHQDLEILVQQGKFRQDLFFR 300

Query: 315 LNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDISSMQDYDWPGNIREL 374
           ++V+ I + PLRER+ D+  L   F + +C E  +P           +    +PGN+REL
Sbjct: 301 IHVMDIVLPPLREREDDILLLAKHFIQEVCKEWDIPNKILTERGQQFLMQQYFPGNVREL 360

Query: 375 KNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSE-----ISLGDNVTQPSLGY 429
           +N+IER + L         +L   P+         Q N+       I L  +   P+ G 
Sbjct: 361 RNIIERAITLSDNEYIDLPQLQSAPLRNVQNFVAGQINHEPLTDQVIPLSPHRKIPAEGL 420

Query: 430 PNDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTLERKYKEW 475
             +  L  +EK  +   +     N++ AA+ LG++ ++L  + K++
Sbjct: 421 --EQYLENIEKEVLLTALNQTHWNRTLAAKKLGMSFRSLRYRLKKF 464