Pairwise Alignments

Query, 677 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 589 a.a., HAMP domain-containing protein from Pseudomonas fluorescens SBW25

 Score =  119 bits (299), Expect = 3e-31
 Identities = 106/390 (27%), Positives = 180/390 (46%), Gaps = 57/390 (14%)

Query: 284 YITAYEPIRDQYHNEIGMLYTGYLMWPFLKAYVTNILEVGIITLFLLVISGLFVYRG--- 340
           Y   Y PI +   +  G++++G L    L   V    +  +  L  L+ S L +  G   
Sbjct: 243 YSGLYWPIFNDAGDLQGVIFSGLLRHTSLVGLVN---QSNLFVLIFLLSSALSLAAGVLV 299

Query: 341 SRDLFRPIERIHRVVKMVQLGKNQRIGQIGLDDKHELAQLAKQFDNMLDQLQQRNEEIVQ 400
           SR L +P+  + + V  V  G      ++ +    ELAQL+  F++M ++L +       
Sbjct: 300 SRRLTKPLRDLSQGVSAVISGDYAH--RVVVSGGDELAQLSSTFNHMTERLGE------- 350

Query: 401 AAHELEAKVQSRTASLQEKTAQLEHHIALLNQTRNKLVVHEKLAALGELTAGIAHEINNP 460
             H LEA+++ R                            ++L ALGE+  G+AHEI NP
Sbjct: 351 -LHHLEAQLRRR----------------------------DRLHALGEVAMGLAHEIRNP 381

Query: 461 TAVILGNTELIRFELGADASRVEEEIDAILLQIERIRNITRSLLQYSRQGGVQDEITWQH 520
             +I   T+L+       A   +  ++ ++ ++ RI ++    L +++       +  Q 
Sbjct: 382 LGIIKTATQLLHRRADL-ADTDKRHLEYVISEVSRINDLITEFLDFAKPNPPLRVL--QP 438

Query: 521 VNPIIDESITLVKTGSKKRDIEFVLELKAHNS-VEVNRHQLLQILVNLQMNAIHAMNGKG 579
             P+++E +          +I+  ++ +A  + +  +  QL Q  +NL +NAI AM   G
Sbjct: 439 ARPLVEEILGFCAPELATHNIDAHIDDQAPGATIYADAKQLKQACLNLIINAIDAMPEGG 498

Query: 580 RIT--IRSEDWVEEGQNRGAVIHIEDQGCGIKPENLKRIFDPFYTTKREGTGLGLSVSQS 637
           R+T  IR+ D          VI I D G GI  + ++RIF PF TTK  GTGLGL+   S
Sbjct: 499 RLTLGIRTLDDT-------TVISIADTGQGIPADMIERIFTPFVTTKASGTGLGLAKVYS 551

Query: 638 LLSQSGGEIKVQSELGVGSTFSIFLPSKNE 667
           ++    G I+  SE   G+TFS+++P+  E
Sbjct: 552 IMESHDGSIECASEKDAGATFSLYIPAMGE 581