Pairwise Alignments

Query, 677 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 860 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  117 bits (293), Expect = 2e-30
 Identities = 81/245 (33%), Positives = 128/245 (52%), Gaps = 15/245 (6%)

Query: 432 QTRNKLVVHEKLAALGELTAGIAHEINNPTAVILGNTELIRFELGADASRVEEEIDAILL 491
           QT   L   +K+ A+G+LT GIAH+ NN   +I GN EL+   +    S ++  +   L 
Sbjct: 475 QTEAALRRSQKMEAVGQLTGGIAHDFNNLLGIITGNLELLERTVQGSESGMKR-VQTALR 533

Query: 492 QIERIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGSKKRDIEFVLELKAHN 551
              R  ++TR LL +SRQ       +   +   I     +V+  S  + IE   ++ A  
Sbjct: 534 SARRGADLTRRLLSFSRQDPKAQGKSRTDIADAISGMQEMVQR-SLTKVIEVRTQMAADT 592

Query: 552 -SVEVNRHQLLQILVNLQMNAIHAMNGKGRITIRSEDWVEEGQNRGA----------VIH 600
              ++NR +    L+NL +NA  AM   G +T+ + +   + + R A          V+ 
Sbjct: 593 WHADINRSEFEDCLLNLCLNARDAMPQGGVLTVEASNVEVDDEMRRADPNLTPGRYVVVS 652

Query: 601 IEDQGCGIKPENLKRIFDPFYTTKR--EGTGLGLSVSQSLLSQSGGEIKVQSELGVGSTF 658
           + D G GI  E + RIF+PF+TTK   +GTGLGL+++     +SGG I+V SE G+G+TF
Sbjct: 653 VSDTGTGIPKEIVDRIFEPFFTTKERGKGTGLGLAMAYGFARRSGGHIRVYSEPGIGTTF 712

Query: 659 SIFLP 663
            ++LP
Sbjct: 713 RLYLP 717