Pairwise Alignments

Query, 951 a.a., formate dehydrogenase from Vibrio cholerae E7946 ATCC 55056

Subject, 1016 a.a., formate dehydrogenase (quinone-dependent) catalytic subunit from Enterobacter asburiae PDN3

 Score =  247 bits (630), Expect = 3e-69
 Identities = 194/645 (30%), Positives = 292/645 (45%), Gaps = 130/645 (20%)

Query: 19  ISRRAFMKNTSLAAGGAAVGASLFTPGMIRKAQASEVDRSAKTEVKRTICSHCSVGCGIY 78
           +SRR F K  +    G    A  F PG +  A+  +  +  +T   R  C++CSVGCG+ 
Sbjct: 3   VSRRQFFKICAGGMAGTTAAALGFAPG-VALAETRQY-KLLRTRETRNTCTYCSVGCGLL 60

Query: 79  A-EVQNGVWTGQEPAF------DHPFNAGGHCAKGAALREHGHGERRLKYPMKLEGG--K 129
              + +G    +   F      DHP N G  C KGA L +  H E RLK+P     G  K
Sbjct: 61  MYSLGDGAKNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFIHSESRLKFPEYRAPGSDK 120

Query: 130 WKKISWEQAINEIGDKALKIRE----ESGPDSVY--------FLGSAKHSNEQAYLFRKM 177
           W++ISWE+A + I     + R+    E   D V          L ++  SNE  YL +K 
Sbjct: 121 WQQISWEEAFDRIAKHIKEDRDANFVEKNADGVTVNRWLSTGMLCASASSNETGYLTQKF 180

Query: 178 ASLWGTNNVDHQARICHSTTVAGVANTWGYGAMTNSFNDMHNCKSMLFIGSNPAEAHPVA 237
               G   VD+QAR+ H  TVA +A T+G GAMTN + D+ N   ++ +G N AEAHPV 
Sbjct: 181 TRALGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWVDIKNANLIVVMGGNAAEAHPVG 240

Query: 238 MQHILIAKEKNSCKIVVADPRRTRTAAKADYFVSLRPGSDVAFIWGVLWHVFKNNWEDKE 297
            +  + AK  N  K++V DPR TRTA+ AD++  +R G+D+ F+ GVL ++  N   ++E
Sbjct: 241 FRWAMEAKIHNGAKLIVIDPRFTRTASVADFYTPIRSGTDITFLSGVLLYLMTNEKYNRE 300

Query: 298 YIRQRV---------------------------------FGMDE---------------- 308
           Y                                      + +DE                
Sbjct: 301 YTEAYTNASLIVREDYHFEDGLFSGYDAEKRKYDKTSWNYELDEKGFAKRDTTLQHPRCV 360

Query: 309 ---IRAEVAKWTPAEVERVTGVSEEEVYNT----AKTLAENRPGCVVWCMGGTQHTTGNN 361
              ++  V+++TP  VE + G  + +        A+T A+++    ++ +G TQH+ G  
Sbjct: 361 WNLLKEHVSRYTPEVVENICGTPKADFLKVCELIAETSAKDKTASFLYALGWTQHSIGAQ 420

Query: 362 NTRAYCILELALGNIGKSGGGANIFRGHDNVQGATDLGVLSDTLPGYYG----------- 410
           N R   +++L LGN+G +GGG N  RGH N+QG TDLG+LS +LPGY             
Sbjct: 421 NIRTMAMVQLLLGNMGMAGGGVNALRGHSNIQGLTDLGLLSQSLPGYMNLPSEKQTDLQT 480

Query: 411 ---------LTEGSWKHWASVWGVDFEWIKNRF-DQGTYNGA-----LPMETPGIPVSRW 455
                    L EG   +W +        +K  F D+ T   +     LP    G  V ++
Sbjct: 481 YLTASTPKPLLEGQVNYWGNYPKFFVSMMKAFFGDKATAENSWGFDWLPKWDKGYDVLQY 540

Query: 456 IDGVLENKDN--LQQRENIRAMFYWGHAVNSQTRGVEMKKAMQKLDMMVIVDPYPTVAAV 513
            + + + K N  L Q  N  A F       ++ + VE   ++ KL  +V +DP  T  + 
Sbjct: 541 FEMMHQGKVNGYLCQGFNPVASF------PNKNKVVE---SLSKLKFLVTIDPLNTETST 591

Query: 514 M-------ND------RTDGVYLLPATTQFETYGSVTASNRSIQW 545
                   ND      +T+ V+ LP+T   E  GS+  S R +QW
Sbjct: 592 FWQNHGESNDVDPSKIQTE-VFRLPSTCFAEENGSIVNSGRWLQW 635



 Score = 47.0 bits (110), Expect = 6e-09
 Identities = 56/190 (29%), Positives = 80/190 (42%), Gaps = 31/190 (16%)

Query: 770  PLHREPLYTPR-RDLLADYPTWDDQAFIFRVPTLYKSIQAQDKSVEYPIILTSGRLVEYE 828
            P H EP  TP   + L      +  A IF+        +A  K  ++P + T+ RL E+ 
Sbjct: 848  PEHYEPFETPLGTNPLHPNVVSNPAARIFK-----GDFEALGKKDKFPYVGTTYRLTEHF 902

Query: 829  GGGEETRSNPWLAELQQEMFVEVNPKDANDLGFMDGDMVWVEGAEKGRIKVKAMVTRRVK 888
                 T+     A  Q E FVE+  K A  LG   GD V V  + +G IK KA+VT+R++
Sbjct: 903  HYW--TKHALLNAIAQPEQFVEIGEKLAGKLGIAHGDTVKV-SSNRGYIKAKAVVTKRIR 959

Query: 889  P--------GMAFLPFHFGGKFQGEDLRPKYPEGTQPYVVGEAANTATTYGYDPVTLMQE 940
                         +P H+G  ++G   +            G  ANT T +  D  T   E
Sbjct: 960  TLNVHGQEVDTIGIPIHWG--YEGVAKK------------GFIANTLTPFVGDANTQTPE 1005

Query: 941  TKVTLCNIRK 950
             K  L N+ K
Sbjct: 1006 FKAFLVNVEK 1015