Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., Ribosomal RNA small subunit methyltransferase B from Xanthobacter sp. DMC5

 Score =  101 bits (252), Expect = 5e-26
 Identities = 90/333 (27%), Positives = 145/333 (43%), Gaps = 29/333 (8%)

Query: 27  RNSLVHPNISLPEPFI---------ASMAKILPDPTQLADFIAACQRPLRKSIRVNTLK- 76
           R  L  P++    PF+         AS+  +  D         A + PL   +R+NTLK 
Sbjct: 107 RARLADPSLEGAAPFVRGDYPQWLHASLRHVFGDSVVEEGAALAARAPL--DLRINTLKG 164

Query: 77  --ISVAEFCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMM 134
              +V         +  + +P+        +D++    P+      + G   +Q+  S +
Sbjct: 165 EPEAVKAELSHLHPEPCRFSPLAL---RIKLDSEGKAPPVSAEPAFLRGEVEVQDEGSQL 221

Query: 135 PVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCG 194
             +A+         VLD+ A  G KT + AALMDN+G + A++    R+K +H  + R G
Sbjct: 222 --AAILARPLPGGQVLDLCAGAGGKTLEFAALMDNKGQIYAHDSDIRRLKPMHERLARAG 279

Query: 195 IRNTALSNFDGC--VFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANT 252
           +RN  + +  G   V G  L  + D VL+DAPC+G GT R++PDA       ++      
Sbjct: 280 VRNVQVRSPRGAEDVLGD-LEGKMDLVLVDAPCTGTGTWRRNPDAKWRVRPGALAQRTAE 338

Query: 253 QKALIESAFQALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLF------ 306
           Q  ++E A   ++ GG L Y TC+L  EEN      L     D        N+       
Sbjct: 339 QAKILEQAAHYVRPGGRLAYVTCSLLDEENGAQVRALLNKREDFSPVSPTENVLALGASG 398

Query: 307 -EHASLALTEEGFLHIFPQMYDCEGFFVAKIRK 338
              A  ALT    L + P+    +GFFV+ +++
Sbjct: 399 PALAEAALTSREGLLMSPRRTGTDGFFVSVMKR 431