Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., Ribosomal RNA small subunit methyltransferase B from Xanthobacter sp. DMC5

 Score =  100 bits (248), Expect = 1e-25
 Identities = 70/227 (30%), Positives = 108/227 (47%), Gaps = 17/227 (7%)

Query: 123 GLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASR 182
           G +++Q+A++ +P  A  +G      V D+ AAPG KT Q+ A       + A + S +R
Sbjct: 236 GEWWVQDAAAALP--ARLLGKVDGLKVADLCAAPGGKTAQLVAA---GAQVTAVDRSGAR 290

Query: 183 VKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWS 242
           +  L  N+ R G+  T +   D   F G     FDAVL+DAPCS  GT+R+ PD   +  
Sbjct: 291 LTRLRDNLARLGLAATVVEG-DAATFAGG---PFDAVLLDAPCSATGTLRRHPDIAVSKR 346

Query: 243 LESIQSIANTQKALIESAFQALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESL 302
              I ++A  Q  L++ A   +K GG +VYSTC+L  EE +     L     D       
Sbjct: 347 PSDIPTLATLQARLLDHAIDLVKPGGLVVYSTCSLEPEEGEAQVERLLAARKDVEREPLR 406

Query: 303 GNLFEHASLALTEEGFLHIFPQMY--------DCEGFFVAKIRKLAS 341
               +   L +T +G +   P  +          +GFF A++R+  S
Sbjct: 407 AGEVDGLDLFITPQGDVRTLPSHWMRGEAERSGLDGFFAARLRRKGS 453