Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., 16S rRNA methyltransferase from Pseudomonas simiae WCS417

 Score = 84.0 bits (206), Expect = 1e-20
 Identities = 73/275 (26%), Positives = 123/275 (44%), Gaps = 17/275 (6%)

Query: 70  IRVNTLKISVAEFCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQE 129
           +RVN    S   + Q   +     TP  +  +G  ++A   +  L   AE   G   +Q+
Sbjct: 173 LRVNRRHHSRDAYLQLLTDAGIGATPCVYSVDGIVLEAATDVRSLPGFAE---GWISVQD 229

Query: 130 ASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHAN 189
            ++ +    L +  A    VLD   APG KT  +  +  +   +VA +  A R+  +  N
Sbjct: 230 EAAQLAADLLDL--APGQRVLDACCAPGGKTCHILEVEKDLVGVVAVDLEAKRLVRVREN 287

Query: 190 IERCGIRNTALSNFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSI 249
           + R G+    ++         W  + F  +L+DAPCS  G IR+ PD       + I ++
Sbjct: 288 LARLGLSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQPDDIAAL 347

Query: 250 ANTQKALIESAFQALKVGGTLVYSTC-TLSREENQQVCWHLKQTYG--DAVSFESLGNLF 306
           A  Q  L+++ +  L+VGG L+Y+TC TL  E  + +   L +T G  +     + G   
Sbjct: 348 AVLQGELLDALWPTLEVGGILLYATCSTLPTENTEVIEAFLARTSGARELDLATTAGIRQ 407

Query: 307 EHASLALTEEGFLHIFPQMYDCEGFFVAKIRKLAS 341
            H    L +EG           +GF+ AK+ K+A+
Sbjct: 408 PHGRQLLAQEG---------GHDGFYYAKLIKIAA 433