Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., tRNA/rRNA cytosine-C5-methylase from Variovorax sp. SCN45

 Score =  102 bits (255), Expect = 2e-26
 Identities = 90/314 (28%), Positives = 140/314 (44%), Gaps = 27/314 (8%)

Query: 36  SLPEPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTP 95
           +LPE  +A +   L D       + + Q+P    +RVN L    A+     A+   +   
Sbjct: 117 NLPEWLVAPLKAQLGDG--FWPLVESLQQPAPLDLRVNALTDKRADVKVELAKAAIKSEV 174

Query: 96  VPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAA 155
            P+   G  I+   +L  L   A    G   +Q+  S +   AL +     + V+D  A 
Sbjct: 175 TPFSPWGLRIEGKPALTKLDAFAR---GAIEVQDEGSQL--LALLLDAKRGEMVVDFCAG 229

Query: 156 PGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLPER 215
            G KT  + A M N G L A + SA R+  L   + R     + LSN           +R
Sbjct: 230 AGGKTLAIGATMRNTGRLYAFDTSAHRLDALKPRLAR-----SKLSNVHPAAIAHERDDR 284

Query: 216 F-------DAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKVGG 268
                   D VL+DAPCSG GT+R++PD     S ++++ +   Q A+++SA + +K GG
Sbjct: 285 IKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAKAVEELTVKQTAILQSAARLVKSGG 344

Query: 269 TLVYSTCTLSREENQQVCWHLKQTYGDAV---SFESLGNLFEHASLALTEEG-----FLH 320
            LVY+TC++  EEN+ +         D V   + E L  L      AL   G     +L 
Sbjct: 345 RLVYATCSVLPEENEAIAEAFGAANPDFVPVDAAELLQGLKVEGFEALCAGGEGGRRYLR 404

Query: 321 IFPQMYDCEGFFVA 334
           ++P  +  +GFF A
Sbjct: 405 LWPHRHATDGFFAA 418