Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) from Sphingobium sp. HT1-2

 Score = 86.7 bits (213), Expect = 2e-21
 Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 17/225 (7%)

Query: 123 GLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASR 182
           G +++Q+ ++  P   L  G     +VLD+ AAPG KT Q+AA       + A + S  R
Sbjct: 223 GAWWVQDIAASCPARLLGAGEGR--TVLDLCAAPGGKTMQLAAA---GWAVTAVDQSKKR 277

Query: 183 VKVLHANIERCGIRNTALSNFDGCVFGGWLPER-FDAVLIDAPCSGEGTIRKDPDAMKNW 241
           ++ L  N+ R G+    +          W P+   DA+L+DAPC+  G  R+ PD +   
Sbjct: 278 LERLSENLARTGLSADVVQ----ADLRQWAPDAPVDALLLDAPCTATGIYRRHPDVLHRI 333

Query: 242 SLESIQSIANTQKALIESAFQALKVGGTLVYSTCTLSREENQ-QVCWHLKQTYGDAVSFE 300
               I  +A+ Q  L+      +K GGTL+Y+TC+L + E + Q+   L       V   
Sbjct: 334 GPRQIAELADLQGELLARVADWVKPGGTLIYATCSLEQAEGEAQMTRFLAARPDFQVRPV 393

Query: 301 SLGNLFEHASLALTEEGFLHIFP----QMYDCEGFFVAKIRKLAS 341
             G L     +A + +G+L   P    +    +GFFVA+I ++ +
Sbjct: 394 QAGEL--PTGMAPSADGWLRTLPDTLAEQGGTDGFFVARIVRIGN 436