Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., Ribosomal RNA small subunit methyltransferase B from Pseudomonas putida KT2440

 Score = 79.0 bits (193), Expect = 3e-19
 Identities = 60/205 (29%), Positives = 92/205 (44%), Gaps = 30/205 (14%)

Query: 149 VLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIER---------CGIRNTA 199
           VLD   APG KT  +         +VA +  A R+  +  N++R         C  R+TA
Sbjct: 247 VLDACCAPGGKTCHLLEAEAGLANMVAIDLEAKRLTRVRENLDRLQLDAELIACDARDTA 306

Query: 200 LSNFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIES 259
                      W  + F  +L+DAPCS  G IR+ PD       + I ++A  Q  L+++
Sbjct: 307 ---------SWWDGKPFQRILLDAPCSATGVIRRHPDIKMTRQADDIPALATLQGELLDA 357

Query: 260 AFQALKVGGTLVYSTC-TLSREENQQVCWHLKQTYG--DAVSFESLGNLFEHASLALTEE 316
            +  L+VGG L+Y+TC TL  E  + +   L +T G  +       G    H    L +E
Sbjct: 358 LWPTLEVGGMLLYATCSTLPTENTEVIKAFLARTPGARELDLATEAGLRQPHGRQLLAQE 417

Query: 317 GFLHIFPQMYDCEGFFVAKIRKLAS 341
           G           +GF+ AK+ K+A+
Sbjct: 418 G---------GHDGFYYAKLIKIAA 433