Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., rRNA methyltransferase from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  174 bits (441), Expect = 6e-48
 Identities = 145/472 (30%), Positives = 225/472 (47%), Gaps = 36/472 (7%)

Query: 35  ISLPEPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLT 94
           + LP  F   M ++L    +   F+ A Q+    SIRVN  K + A            L 
Sbjct: 1   MQLPVSFTERMQRLL-GLQEYQQFLNALQQTPPVSIRVNKAKATAAA----------GLA 49

Query: 95  PVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMG-NAHYD-SVLDM 152
            VPW   G ++    S     + A H AG +Y+QEASSM    AL    N      VLD+
Sbjct: 50  AVPWAAAGRYLPVRPSFTL--DPAIH-AGAYYVQEASSMFVEQALRQAVNLEQPLQVLDL 106

Query: 153 AAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWL 212
             APG K+T +A+L+    +LV+NE   SR  +L  N+ + G  N  +++ D   FG  L
Sbjct: 107 CGAPGGKSTHLASLISEDSLLVSNEVIRSRASILAENVAKWGSGNVLVTSNDPRDFGR-L 165

Query: 213 PERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKVGGTLVY 272
           P+ FD +++DAPCSGEG  RKDP A++ WS E+++  A  Q+ ++   + ALK GG LVY
Sbjct: 166 PDFFDVMVVDAPCSGEGMFRKDPQAVQEWSEENVKLCAQRQQRILMDVWDALKPGGLLVY 225

Query: 273 STCTLSREENQQ-VCWHLKQTYGDAVSFESLGNLFEHASLALTEEGFLHIFPQMYDCEGF 331
           STCT + +EN++ V W  +Q   +++  E         +     EG+   +P     EGF
Sbjct: 226 STCTWNEQENEENVAWLSEQEGVESIRLELQPEWGVVPTQLGGVEGY-RFYPHRVQGEGF 284

Query: 332 FVAKIRKLASVPTPEVNK-RLGKFPFNKASHKQQAEIAQQLHKSLGIELPSDAQVWLRDN 390
           F+A +RK          K +  K+    A  K++A +   L       L  +   +L+  
Sbjct: 285 FMAVVRKAGEEAAISHGKSKKKKYKLTPAGKKEKALVENWL-------LEPEHYTFLQYG 337

Query: 391 DV------WLFPEALEPLLGELRFSRMGIKIAEAHKSGYRWQHQVATCLASSSASHSV-E 443
           +V      +LF EA + +   L     G ++AE      +    +A     + A+  V E
Sbjct: 338 EVITALPAYLF-EAADEVYQHLYVVYAGTELAEVKGKKLKPLQGLALSQQLNKAAFQVAE 396

Query: 444 LDTTQAREWFMGRDVRPEGQSGQGEVIIRYANDVIGLGKWVGNRVKNGLPRE 495
           LD  QA  +    D+   G +G   ++++Y    +G  K +G+RV N  P+E
Sbjct: 397 LDLEQALRYLRKEDI-SLGTNGNDWLLLQYKGLPLGWAKQIGSRVNNYYPKE 447