Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., Fmu (Sun) /eukaryotic nucleolar NOL1/Nop2p; tRNA and rRNA cytosine-C5-methylases from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  100 bits (249), Expect = 1e-25
 Identities = 85/292 (29%), Positives = 128/292 (43%), Gaps = 19/292 (6%)

Query: 60  AACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAE 119
           A+  +P    +RVN LK           +        P+   G  +    SL  L     
Sbjct: 139 ASLNQPAPLDLRVNVLKAKRDAALAGLQKAGLTGAATPYSPLGIRLQGKPSLAKL---PA 195

Query: 120 HMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFS 179
            + G   +Q+  S +   AL +     + V+D  A  G KT  + A M N G L A + S
Sbjct: 196 FVQGEVEVQDEGSQL--LALLLDAKRGEMVVDFCAGAGGKTLAIGAAMRNSGRLYAFDTS 253

Query: 180 ASRVKVLHANIERCGIRNT-----ALSNFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKD 234
             R+  L   + R G+ N      A    D       L  + D VL+DAPCSG GT+R+ 
Sbjct: 254 GHRLDALKPRLARSGLSNVHPVAIAHERDDRIKR---LAGKIDRVLVDAPCSGLGTLRRS 310

Query: 235 PDAMKNWSLESIQSIANTQKALIESAFQALKVGGTLVYSTCTLSREENQQVCWHLKQTYG 294
           PD     + +++ + A  Q A++ SA + LK GG LVY+TC+L + EN+ VC      + 
Sbjct: 311 PDLKWRQTPQTVAAQAELQLAILNSAARLLKPGGRLVYATCSLLQAENEAVCAAFGPAHP 370

Query: 295 DAVSFESLG-----NLFEHASLALTEEG-FLHIFPQMYDCEGFFVAKIRKLA 340
           D       G     ++   + L   E G +L ++P  +  +GFF A  RK A
Sbjct: 371 DFEPVPVAGLLEGVHVSGASGLCAGENGDWLRLWPHRHATDGFFAAVWRKRA 422