Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 513 a.a., Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  552 bits (1422), Expect = e-161
 Identities = 263/471 (55%), Positives = 345/471 (73%), Gaps = 3/471 (0%)

Query: 35  ISLPEPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLT 94
           +  P+ F+  M + +P      +FI+ACQRPLR+SIR+NTLKISVA+F    A   W LT
Sbjct: 40  VYFPDAFLTQMREAMPSTLSFDEFISACQRPLRRSIRINTLKISVADFLALIAPYGWSLT 99

Query: 95  PVPWCENGFWIDAD-ESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMA 153
           P+PWC  GFWI+ D E  +PLG+TAEH++GLFYIQEASSM+PV+ALF  + H   V+DMA
Sbjct: 100 PIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMA 159

Query: 154 AAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP 213
           AAPGSKTTQ+AA M N+G ++ANEFSASRVKVLHANI RCGI NTAL++FDG VFG  LP
Sbjct: 160 AAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALP 219

Query: 214 ERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKVGGTLVYS 273
           E FDA+L+DAPCSGEG +RKDPDA+KNWS ES   IA TQ+ L++SAF AL+ GGTLVYS
Sbjct: 220 EMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTLVYS 279

Query: 274 TCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHASLALTEEGFLHIFPQMYDCEGFFV 333
           TCTL+R+EN+ VC  LK+TY DAV F  LG+LF  A  ALT EGFLH+FPQ+YDCEGFFV
Sbjct: 280 TCTLNRQENEAVCLWLKETYADAVEFLPLGDLFPDADRALTPEGFLHVFPQIYDCEGFFV 339

Query: 334 AKIRKLASVPT-PEVNKRLGKFPFNKASHKQQAEIAQQLHKSLGIELPSDAQVWLRDNDV 392
           A++RK++S+P  P    ++G FPF     ++   + Q  + ++G+    +  +W R+ +V
Sbjct: 340 ARLRKMSSLPAMPAPGYKVGAFPFTPLKGREALHVTQAAN-AVGLLWDENLHLWQREKEV 398

Query: 393 WLFPEALEPLLGELRFSRMGIKIAEAHKSGYRWQHQVATCLASSSASHSVELDTTQAREW 452
           WLFP  +E L+G++RFSR+GIK+AE+H  GYRWQH+    LA  + +H+ EL   +A EW
Sbjct: 399 WLFPAEIESLIGKVRFSRLGIKLAESHNKGYRWQHEATIALACPTHAHAFELSVQEAEEW 458

Query: 453 FMGRDVRPEGQSGQGEVIIRYANDVIGLGKWVGNRVKNGLPRELVRDKNLF 503
           + GRD+ P+      +V++ + +  +GL K +G R+KN  PRELVRD  LF
Sbjct: 459 YRGRDIYPQTPPAADDVLVTFQHQPLGLAKRIGARIKNSYPRELVRDGKLF 509