Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Erwinia amylovora T8

 Score =  520 bits (1340), Expect = e-152
 Identities = 260/476 (54%), Positives = 339/476 (71%), Gaps = 6/476 (1%)

Query: 33  PNIS---LPEPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEK 89
           P+IS    P  F+  M ++LPD    A FIA  Q+PLR+S+RVNTLKISV +F Q     
Sbjct: 2   PHISRVFFPPAFLEQMQQLLPDANDFARFIAISQQPLRRSLRVNTLKISVDDFLQLVKPY 61

Query: 90  EWQLTPVPWCENGFWIDADES-LVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDS 148
           +W LTP+PWC  GFWI  D++  +PLG+TAEH+AGLFYIQEASSM+PVSALF G      
Sbjct: 62  QWALTPIPWCPEGFWISRDDADKLPLGSTAEHLAGLFYIQEASSMLPVSALFAGGNMPQR 121

Query: 149 VLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVF 208
           V+DMAAAPGSKTTQ+AA M ++G ++ANE+SASRVKVLHAN+ RCGI NTA+++FDG VF
Sbjct: 122 VMDMAAAPGSKTTQIAACMGDRGAILANEYSASRVKVLHANLSRCGISNTAMTHFDGRVF 181

Query: 209 GGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKVGG 268
           G  LPE FDAVL+DAPCSGEG +RKD DA++NWS  S   IA TQ+ LI SAF AL+ GG
Sbjct: 182 GSALPECFDAVLLDAPCSGEGVVRKDADALRNWSATSTAEIAATQRDLINSAFHALRPGG 241

Query: 269 TLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHASLALTEEGFLHIFPQMYDC 328
           TLVYSTCTL+R ENQQV   L + Y DAV+ E L  LF  A    T EGFLH+FP ++D 
Sbjct: 242 TLVYSTCTLNRSENQQVVRWLLEQYPDAVAIEPLNTLFNGAEQVATAEGFLHVFPHIFDS 301

Query: 329 EGFFVAKIRKLASVP-TPEVNKRLGKFPFNKASHKQQAEIAQQLHKSLGIELPSDAQVWL 387
           EGFFVA++RK++SV    +   ++GK PF+  S +QQ E++    K +G+   ++ ++W 
Sbjct: 302 EGFFVARLRKVSSVARLSQPTYKVGKPPFSPLSRQQQQEVSDAAAK-VGLRWKTELKLWQ 360

Query: 388 RDNDVWLFPEALEPLLGELRFSRMGIKIAEAHKSGYRWQHQVATCLASSSASHSVELDTT 447
           RD ++WLFP  +EPLLG +RFSR+G+K+AE    GYRWQH  A  LA + + ++ E+++ 
Sbjct: 361 RDKEIWLFPAGIEPLLGRVRFSRIGLKLAETFTKGYRWQHHAAVALADARSENAFEVNSH 420

Query: 448 QAREWFMGRDVRPEGQSGQGEVIIRYANDVIGLGKWVGNRVKNGLPRELVRDKNLF 503
           +A EW+ GRD+ P+      E+II +    IG+ K VG+R+KN  PRELVRD  LF
Sbjct: 421 EAEEWYRGRDIYPDRSLPGDELIICHQKQAIGIAKKVGSRIKNNYPRELVRDGKLF 476