Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 481 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Escherichia coli ECRC62

 Score =  556 bits (1434), Expect = e-163
 Identities = 269/471 (57%), Positives = 349/471 (74%), Gaps = 3/471 (0%)

Query: 35  ISLPEPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLT 94
           +  P+ F+  M + +P      DF+AACQRPLR+SIRVNTLKISVA+F Q  A   W LT
Sbjct: 8   VYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLT 67

Query: 95  PVPWCENGFWIDAD-ESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMA 153
           P+PWCE GFWI+ D E  +PLG+TAEH++GLFYIQEASSM+PV+ALF  +     V+D+A
Sbjct: 68  PIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVA 127

Query: 154 AAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP 213
           AAPGSKTTQ+AA M+N+G ++ANEFSASRVKVLHANI RCGI N AL++FDG VFG  +P
Sbjct: 128 AAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVP 187

Query: 214 ERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKVGGTLVYS 273
           E FDA+L+DAPCSGEG +RKDPDA+KNWS ES Q IA TQ+ LI+SAF AL+ GGTLVYS
Sbjct: 188 EMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYS 247

Query: 274 TCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHASLALTEEGFLHIFPQMYDCEGFFV 333
           TCTL++EEN+ VC  LK+TY DAV F  LG+LF  A+ ALTEEGFLH+FPQ+YDCEGFFV
Sbjct: 248 TCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFPGANKALTEEGFLHVFPQIYDCEGFFV 307

Query: 334 AKIRKLASVPT-PEVNKRLGKFPFNKASHKQQAEIAQQLHKSLGIELPSDAQVWLRDNDV 392
           A++RK  ++P  P    R+G FPF+    ++  +I +Q   S+G+    + ++W RD ++
Sbjct: 308 ARLRKTQAIPALPAPKYRVGNFPFSPVKDREAGQI-RQAAASVGLNWDGNLRLWQRDKEL 366

Query: 393 WLFPEALEPLLGELRFSRMGIKIAEAHKSGYRWQHQVATCLASSSASHSVELDTTQAREW 452
           WLFP  +E L+G++RFSR+GIK+AE H  GYRWQH+    LA+    ++ EL   +A EW
Sbjct: 367 WLFPVGIEALIGKVRFSRLGIKLAETHNKGYRWQHEAVIALATPDNVNAFELTPQEAEEW 426

Query: 453 FMGRDVRPEGQSGQGEVIIRYANDVIGLGKWVGNRVKNGLPRELVRDKNLF 503
           + GRDV P+      +V++ + +  IGL K +G+R+KN  PRELVRD  LF
Sbjct: 427 YRGRDVYPQAAPVADDVLVTFQHQPIGLAKRIGSRLKNSYPRELVRDGKLF 477