Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 482 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Dickeya dianthicola ME23

 Score =  518 bits (1335), Expect = e-151
 Identities = 259/467 (55%), Positives = 335/467 (71%), Gaps = 4/467 (0%)

Query: 36  SLPEPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTP 95
           SL   F+ +M  I+P    +  FI  CQRPLR+SIRVNTLKISV +F    A   W+L  
Sbjct: 8   SLTPDFLTAMQAIMPAHLSMEAFIDVCQRPLRRSIRVNTLKISVPDFLALVAPYGWELEA 67

Query: 96  VPWCENGFWI-DADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAA 154
           VPWC+ GFW+ +ADE  + LGN  EH+AGLFYIQEASSM+PVSAL MG+     VLDMAA
Sbjct: 68  VPWCDEGFWLLNADEEAMRLGNALEHLAGLFYIQEASSMLPVSALLMGDDAPARVLDMAA 127

Query: 155 APGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLPE 214
           APGSKTTQ+AA ++NQG++VANE+SASRVKVLHAN+ RCG+ NTAL++FDG VFG  LPE
Sbjct: 128 APGSKTTQIAARLNNQGLIVANEYSASRVKVLHANLHRCGVSNTALTHFDGRVFGNALPE 187

Query: 215 RFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKVGGTLVYST 274
            FDA+L+DAPCSGEG +RKDP AM +WSLESI  IA TQ+ LI SAF ALK GG L+YST
Sbjct: 188 TFDAILLDAPCSGEGVVRKDPAAMSHWSLESIADIAATQRELILSAFHALKPGGVLIYST 247

Query: 275 CTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHASLALTEEGFLHIFPQMYDCEGFFVA 334
           CTL+ +ENQQVC  L Q +  A   ESL +LF  A  ALTE+GFLH+FPQ+YD EGFFVA
Sbjct: 248 CTLNHQENQQVCRWLMQQFPAACEVESLKDLFPQAHRALTEDGFLHVFPQIYDSEGFFVA 307

Query: 335 KIRKLASV-PTPEVNKRLGKFPFNKASHKQQAEIAQQLHKSLGIE-LPSDAQVWLRDNDV 392
           ++RK A+V P    + +LGK PF+  +HK  A++ +Q  + LG++      Q+W RD+++
Sbjct: 308 RLRKTAAVPPLAAPDYKLGKLPFSPVNHK-DAQLIRQSAQRLGLQWSEQQLQLWQRDDEI 366

Query: 393 WLFPEALEPLLGELRFSRMGIKIAEAHKSGYRWQHQVATCLASSSASHSVELDTTQAREW 452
           WLFP AL+P+LG++RFSR+G+K+AE    GYRWQH+    L    ++++  L   Q  +W
Sbjct: 367 WLFPAALQPMLGKMRFSRIGVKLAERFAKGYRWQHEAVVALGHPDSANTYALSAEQVVDW 426

Query: 453 FMGRDVRPEGQSGQGEVIIRYANDVIGLGKWVGNRVKNGLPRELVRD 499
           F G+D+ P       E+++ +    +GL K VG R+KN LPR+LVRD
Sbjct: 427 FRGKDIYPPSPVSHDEILLTWQQTTLGLTKRVGQRLKNTLPRDLVRD 473