Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., tRNA and rRNA cytosine-C5-methylases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  151 bits (382), Expect = 4e-41
 Identities = 131/469 (27%), Positives = 214/469 (45%), Gaps = 31/469 (6%)

Query: 37  LPEPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPV 96
           LP+ F   MA IL +  + + F AA   P   SIR+N  K S               TPV
Sbjct: 9   LPKAFEQQMASIL-EADEYSLFKAALLSPSNTSIRINPRKSSPLSA---------DTTPV 58

Query: 97  PWCENGFWIDADESLV--PLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSV-LDMA 153
           PW   GF++         PL +     AG +Y+QEASSM     L    A  + + LD+ 
Sbjct: 59  PWNSQGFFLPQRPKFTFDPLFH-----AGAYYVQEASSMFIGHILNHLQAPKEGLYLDLC 113

Query: 154 AAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLP 213
           AAPG K++ +A  +  +G+LVANE   +R  +L  N+ + G+ NT ++N D   F   L 
Sbjct: 114 AAPGGKSSLLADYIGEEGMLVANEVIKTRASILKENMIKWGLGNTVVTNNDPSHFEP-LE 172

Query: 214 ERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKVGGTLVYS 273
             FD VL+DAPCSGEG  RKD  A + WS E+++  A  Q+ +++         G L+YS
Sbjct: 173 GLFDVVLVDAPCSGEGMFRKDVQAREEWSPENVKLCAARQQRILDQTGALPGPEGYLIYS 232

Query: 274 TCTLSREENQQVCWHLKQTYG-DAVSFESLGNLFEHASLALTEEGFLH---IFPQMYDCE 329
           TCT +++EN+ +   L + +  + V      +     +   TE G  +    FP M   E
Sbjct: 233 TCTFNQQENEDMIRFLTEEFAYEPVRIPLNPDWGIVETETDTEWGTFYGYRFFPHMVSGE 292

Query: 330 GFFVAKIRKL--ASVPTPEVNKRLGKFPFNKASHKQQAEIAQQLHKSLGIELPSDAQVWL 387
           G F+   ++   A V  P+  K        + +  ++ ++ ++L     ++     + + 
Sbjct: 293 GLFITVFKRPSDAHVQEPKKMKDFKHILLQRTNKAEKHQLREELKLDETVDFYKLKKSFF 352

Query: 388 RDNDVWLFPEALEPLLGELRFSRMGIKIAEAHKSGYRWQHQVA-TCLASSSASHSVELDT 446
                W   +  E L   L     G ++ + +K  +   H  A + L  +   H   L+ 
Sbjct: 353 ALKGFW--AKYFELLATTLNVKYFGTELGKFNKGQFIPTHDFAVSILPKNFPKHEASLEA 410

Query: 447 TQAREWFMGRDVRPEGQSGQGEVIIRYANDVIGLGKWVGNRVKNGLPRE 495
             +   ++ +D      S  G V++ Y +  +G  K +GNR+ N  P+E
Sbjct: 411 AHS---YLKKDELELDISQDGWVLLTYQHLPLGWIKNIGNRINNYYPKE 456