Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 492 a.a., rRNA cytosine-C5-methyltransferase from Bacteroides stercoris CC31F

 Score =  157 bits (396), Expect = 1e-42
 Identities = 137/498 (27%), Positives = 223/498 (44%), Gaps = 60/498 (12%)

Query: 35  ISLPEPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLT 94
           + LP  F A   + L       + + + +     SIR+N LK     F  R+ E      
Sbjct: 1   MELPVSF-ADYTRTLLGDEDYKELVTSLESEQSVSIRLNPLK----PFAFRSGEHA---- 51

Query: 95  PVPWCENGFWIDADESLV--PLGNTAEHMAGLFYIQEASSMMPVSAL--FMGNAHYDSVL 150
            VPWC +GF+++   +    PL +     AG +Y+QEASSM    AL  +MG      +L
Sbjct: 52  -VPWCTSGFYLEERPTFTFDPLFH-----AGCYYVQEASSMFVEQALKQYMGEEPV-VML 104

Query: 151 DMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGG 210
           D+ AAPG K+T + +L+ +  +L+ANE   +R ++L  N+ + G  +  ++N D   F  
Sbjct: 105 DLCAAPGGKSTHIRSLLPDNSLLIANEVIRNRSQILAENLTKWGHPDVVVTNSDPSDFTP 164

Query: 211 WLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKVGGTL 270
            L + FD +L D PCSGEG  RKDP A+  W+ E+++     Q+ +I   +  LK GG L
Sbjct: 165 -LEDFFDVILTDVPCSGEGMFRKDPVAISEWNPENVEICRQRQRRIIADIWPCLKPGGIL 223

Query: 271 VYSTCTLSREENQQVCWHLKQTYGDAV-------SFESLGNLFEHASLALTEEGFLHIFP 323
           +YSTCT + +EN++    ++  +G  V        +   GNL +  S  +         P
Sbjct: 224 IYSTCTYNTKENEENIRWIRDEFGAEVLPLDVAEEWNITGNLLQGESFPV-----YRFLP 278

Query: 324 QMYDCEGFFVAKIRKLASVPTPEVNKRLGKFPFNKASHKQQAEIAQQLHKSL---GIELP 380
                EGFF+A +RK         +K+L        +   + E +++  + +   G + P
Sbjct: 279 HKTQGEGFFLAVLRKPGMSVRNSGDKQLISLAIAPETPGLRVEKSREKGRKVQGKGKQTP 338

Query: 381 SDAQVWLRDNDVWLF----------------------PEALEPLLGELRFSRMGIKIAEA 418
             ++  L     W+F                      PE L  L   LR  + G++IA  
Sbjct: 339 GLSKEQLAILQKWIFTADKYEFIQKGGNVSAFPKCYLPE-LSALQSSLRIVQAGLEIAGQ 397

Query: 419 HKSGYRWQHQVATC-LASSSASHSVELDTTQAREWFMGRDVRPEGQSGQGEVIIRYANDV 477
               +   H +A   +  S A    E+   QA  +     V     + +G V++ Y +  
Sbjct: 398 KGKDWIPCHALAVSGILVSDAFPCEEISYEQAIAYLRKEAVTLSDAAPRGVVLLTYKHVP 457

Query: 478 IGLGKWVGNRVKNGLPRE 495
           +G  K +GNR  N  P+E
Sbjct: 458 LGFVKNIGNRANNLYPQE 475