Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., RsmB/NOP family class I SAM-dependent RNA methyltransferase from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  106 bits (265), Expect = 1e-27
 Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 22/227 (9%)

Query: 123 GLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASR 182
           G +++Q+A++ +P   L +     ++ LDM AAPG KT Q+AA       +VA + SA R
Sbjct: 232 GDWWVQDAAAAVPGRLLDV--KPLETALDMCAAPGGKTLQLAA---TGASVVALDRSAPR 286

Query: 183 VKVLHANIERCGIRNTALSNFDGCVFGGWLPER-FDAVLIDAPCSGEGTIRKDPDAMKNW 241
           +K L  N+ER G+    ++         W   R FDAVL+DAPC+  GT R++P+ ++  
Sbjct: 287 LKRLTQNLERTGLTAEVVA----VPAEDWEDARVFDAVLLDAPCTATGTFRRNPEVLRAT 342

Query: 242 SLESIQSIANTQKALIESAFQALKVGGTLVYSTCTLSREENQ-QVCWHLKQTYG---DAV 297
               +  +A+ Q  L+++A + +K GG LVY TC+L REE + Q+   L++       A 
Sbjct: 343 KPAEVAKLADVQHRLLDAAAERVKPGGRLVYCTCSLEREEGETQIIAFLRRNPAFRTVAA 402

Query: 298 SFESLGNLFEHASLALTEEGFLHIFPQMY----DCEGFFVAKIRKLA 340
              ++G   E    ALT EG+L I P M+      +GFF A++ +++
Sbjct: 403 DPTAVGAPPE----ALTPEGWLRILPSMWAEHGGLDGFFAARLERVS 445