Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., rRNA cytosine-C5-methyltransferase from Phocaeicola dorei CL03T12C01

 Score =  152 bits (384), Expect = 3e-41
 Identities = 140/484 (28%), Positives = 208/484 (42%), Gaps = 48/484 (9%)

Query: 35  ISLPEPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLT 94
           + LP  F A   + + + T  A   AA Q     SIRVN  K S           E    
Sbjct: 1   MKLPSEFEARTLEWMGEETYRA-LEAALQTEPPVSIRVNRTKWS----------GEVTGE 49

Query: 95  PVPWCENGFWIDADESLV--PLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDM 152
           PV W   G ++    +    PL +     AG +Y+QEASSM     L         +LD+
Sbjct: 50  PVLWASAGVYLSQRPTFTFDPLFH-----AGCYYVQEASSMFVEQVLRTYITGPVVMLDL 104

Query: 153 AAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWL 212
            AAPG K+T + +++    +LVANE   +R +VL  N+ + G     ++N D   F   L
Sbjct: 105 CAAPGGKSTHVRSVLPVGSLLVANEVMRNRSQVLAENLIKWGNVEVVVTNNDPADFTS-L 163

Query: 213 PERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKVGGTLVY 272
            E FD VL D PCSGEG  RKDP A++ WS +++Q     Q+ ++   + ALK GG L+Y
Sbjct: 164 TEVFDVVLADVPCSGEGMFRKDPVAVEEWSTDNVQVCWQRQRRILADIWPALKPGGLLIY 223

Query: 273 STCTLSREENQQ-VCWHLKQTYGDAVSFESLGNLFEHASLALTEEGFLHIFPQMYDCEGF 331
           STCT +REE+++ V W   +   + +    +       +LA          P     EGF
Sbjct: 224 STCTYNREEDEKNVAWIADELGAEILKVPVVSEWGIIGNLAGQNFPVYRFLPHRVKGEGF 283

Query: 332 FVAKIRKLASV--PTPEVNKRLGKFPFNKASHKQQAEIAQQLHKSLGIELPSDAQVWL-- 387
           F+A +RK A++    P +  R  K    K   K +     Q+        P + + WL  
Sbjct: 284 FLAVLRKSAAISHAVPCICCRDDKEKITKKKRKGEKGNLSQV-----APFPKEVKSWLKQ 338

Query: 388 --------RDNDVWLFPEA----LEPLLGELRFSRMGIKIAEAHKSGYRWQHQVATCLAS 435
                   R   V  FP       +    EL+    G+ I E         H +A    S
Sbjct: 339 AEDFRFEVRGTKVIAFPNVHLSEYDLFRQELKVVHAGVTIGELKGKDVIPDHSLA---MS 395

Query: 436 SSASHS----VELDTTQAREWFMGRDVRPEGQSGQGEVIIRYANDVIGLGKWVGNRVKNG 491
           +  +H      EL   QA  +     +  +    +G +++ Y N  +G  K +GNR  N 
Sbjct: 396 TQLNHDGFSCFELTYEQAIAYLRKEAITLDASVPRGYILLTYKNIPLGFAKNIGNRANNL 455

Query: 492 LPRE 495
            P+E
Sbjct: 456 YPQE 459