Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., Ribosomal RNA small subunit methyltransferase B from Acinetobacter radioresistens SK82

 Score = 89.7 bits (221), Expect = 2e-22
 Identities = 74/290 (25%), Positives = 129/290 (44%), Gaps = 14/290 (4%)

Query: 52  PTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPVPWCENGFWIDADESL 111
           P Q+       ++    ++RVN  KIS   + ++    + Q       E G  +D     
Sbjct: 158 PEQIQSLSQNLKQSAPLTLRVNQRKISREAYLEQLHNIQIQAHACVVSEVGIVLDQS--- 214

Query: 112 VPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQG 171
           +P+     +  G F +Q+  + +  S L   N +  +V+D  AAPG KT  +        
Sbjct: 215 MPIRELPGYDEGWFSVQDEHAQLSTSLL--PNLNTKTVIDACAAPGGKTAHLLEKYQ-PA 271

Query: 172 VLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLPER-FDAVLIDAPCSGEGT 230
           +LVA +    R+K +  N++R  +    +    G     W PE+  D +++DAPCS  G 
Sbjct: 272 LLVALDQDPQRLKRITENLQRLDLEAGHVQIEAGDATR-WQPEQPVDCIILDAPCSAIGV 330

Query: 231 IRKDPDAMKNWSLESIQSIANTQKALIESAFQALKVGGTLVYSTCTLSREENQQVCWHLK 290
           +R+ PD         I    + QK ++   +Q L VGGTL+Y TC++ + EN+Q      
Sbjct: 331 LRRHPDIRLLRQPSDIAQTVDLQKRILHHMWQQLNVGGTLLYITCSILKVENEQQMTQFF 390

Query: 291 QTYGDAVSFESLGNLFEHASLALTEEGFLHIFPQMYDCEGFFVAKIRKLA 340
             + DAV  +        A   + +     + P+    +GF+  +I+K+A
Sbjct: 391 IEHKDAVEDKI------QADWGIEQLYGRQLLPEPGHGDGFYYCRIKKVA 434