Pairwise Alignments

Query, 610 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 600 a.a., ABC transporter, transmembrane region:ABC transporter from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  225 bits (574), Expect = 4e-63
 Identities = 163/514 (31%), Positives = 257/514 (50%), Gaps = 14/514 (2%)

Query: 96  LMVVVMRIASQLLNILQSRQFTLVSKTITYEMRRKMIEKLGRISIRQYETRGSGGINAHL 155
           L++V++     L + L +     VS  + +++R ++  KL  +  R ++T  SG + + +
Sbjct: 82  LLIVLIAAWQGLGSFLGNYFLAKVSLGLVHDLRVELFNKLLVLPNRYFDTTNSGHLISRI 141

Query: 156 ITDIETIDQFIGSTLSKFLISLLTVIGTAIVLLWLEWRLGLFILLVNPIVIYFSRMLGSQ 215
             ++  +       +   +   LTV+   I LL + W+L L +L + P++         +
Sbjct: 142 TFNVTMVTGAATDAIKVVIREGLTVVFLFIYLLMMNWKLTLVMLAILPLIAVMVGTASKK 201

Query: 216 VKHLKKRENQAFERFQNRLVETLDGIYQLRAANKEREFLNRLISDADAVRENADKYAWQS 275
            +   K+   A     +   ET+ G   +R+   E     R    A A   N  K    +
Sbjct: 202 FRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEAYEQARF---AQASNSNTQKQLRMT 258

Query: 276 EAAGRLSFLLFLLGFELFRAVAMLMVVF--SDLTIGQIFAVFGYLWFMLSPVQELLGIQF 333
           +     + +L L+ +    AV M +V+F   + T G + A       +  P+++L  +  
Sbjct: 259 KTGAIYTPMLQLVIYSAM-AVLMFLVLFLRGEATAGDLVAYITAAGLLPKPIRQLSEVSS 317

Query: 334 SWYAAKAALKRINSLLELEEEYRPISKVNPFTQLGEVDIEINNIHFSYDGES-QVLNDLS 392
           +     A  + I   L++EEE      +      G   +E+ N+ F Y   + QVLND+S
Sbjct: 318 TIQKGVAGAESIFEQLDVEEEV-DTGTIERERVTGH--LEVKNLSFFYPQTARQVLNDIS 374

Query: 393 LHIPAGKKVALVGASGGGKSTLIQLLIGVYRAQSGAIRFNGQHCDDISFDVIRDQIAVVL 452
                G+ +ALVG SG GKSTL  L+   Y    G I  +G   +D     +R  IA V 
Sbjct: 375 FSAAPGQMIALVGRSGSGKSTLANLIPRFYGHDIGNILLDGVEINDYRLRNLRRHIAQVN 434

Query: 453 QQPILFNDTLRHNLTLG---GQFSDDVLWQALDIAQLQDVITKLDQGLESQIGRNGIRLS 509
           Q   LFNDT+ +N+  G   G    D+   A D A  ++ I +L QG ++Q+G NG+ LS
Sbjct: 435 QNVTLFNDTIANNIAYGDLAGAPRADIEAAAAD-AYAREFIDQLPQGFDTQVGENGVLLS 493

Query: 510 GGQRQRLAIARMVLSNPKFVILDEATSALDTATEAALHLALSKFLHGRTTLIVAHRLSAV 569
           GGQRQRLAIAR +L N   +ILDEATSALDT +E  +  AL   + GRTTL++AHRLS +
Sbjct: 494 GGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMKGRTTLVIAHRLSTI 553

Query: 570 KQADLIYVLEDGHVSQSGTHHELLEQEGLYQTLY 603
           ++ADLI V++ G + + GTH ELL Q G Y  L+
Sbjct: 554 EKADLILVMDAGQIVERGTHTELLAQNGYYARLH 587