Pairwise Alignments

Query, 610 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 592 a.a., SmdB family multidrug efflux ABC transporter permease/ATP-binding protein from Pectobacterium carotovorum WPP14

 Score =  227 bits (578), Expect = 1e-63
 Identities = 176/591 (29%), Positives = 296/591 (50%), Gaps = 60/591 (10%)

Query: 33  RAKLLFANFIAVVATLISVPIPLLMPLMVDEVLLNHPAKGVEVMNQF-LPQGWQTATGYI 91
           R  LL    +  +A +  V  P+L+   +D+++    AKG     QF L      A  YI
Sbjct: 22  RKPLLQGVLMLWIAAIAEVSGPVLVSYFIDDLV----AKG-----QFPLAIAAGLAMAYI 72

Query: 92  MLTLLMVVVMRIASQLLNILQSRQFTLVSKTITYEMRRKMIEKLGRISIRQYETRGSGGI 151
           +L +L        +  L+  Q+  F  V+  +  ++R  +++   R  +  ++T+  G +
Sbjct: 73  LLQIL--------AASLHYFQTLLFNRVAVGVVQQLRIDVMDAALRQPLSTFDTQPVGQL 124

Query: 152 NAHLITDIETIDQFIGSTLSKFLISLLTVIGTAIVLLWLEWRLGLFILLVNP-----IVI 206
            + +  D E +       +S  L S   V    + +  L W + L  L++ P     +V+
Sbjct: 125 ISRVTNDTEVVKDLYVMVVSTVLRSAALVGAMLVAMFSLNWEMALVALMIFPAVATVMVL 184

Query: 207 Y--FSRMLGSQVKHLKKRENQAFERFQNRLVETLDGIYQLRAANKEREFLNRLISDADAV 264
           Y  FS  +  +V+      N  F        E ++G+  ++   ++  F  +L + +   
Sbjct: 185 YHRFSTPIVRKVRSYLADINDGFN-------EVINGMGVIQQFRQQARFGKKLGAASH-- 235

Query: 265 RENADKYAWQSEAAGRLSFLLFLLGFELFRAVAM--LMVVFSDLTIGQI-----FAVFGY 317
               + Y  + +A     FLL  L   LF A+ +  L++ F   +IG +     +A   Y
Sbjct: 236 ----EHYEARMKALRLEGFLLRPL-LSLFAAMVLCGLLIQFGFSSIGSVGVGVLYAFINY 290

Query: 318 LWFMLSPVQELLGIQFSWYAAKAALKRINSLLELE-----EEYRPISKVNPFTQLGEVDI 372
           L  +  P+ EL   Q     A  A +RI  L++ +     ++ RP++        G VDI
Sbjct: 291 LGRLNEPLIELTTQQSMLQQAVVAGERIFELMDGKKQCYGDDERPLAT-------GRVDI 343

Query: 373 EINNIHFSYDGESQVLNDLSLHIPAGKKVALVGASGGGKSTLIQLLIGVYRAQSGAIRFN 432
           +  ++ FSY  E +VL ++SL IP    VALVG +G GKSTL  LL+G Y    G IR +
Sbjct: 344 D--DVSFSYGTEKRVLQNISLTIPERGFVALVGHTGSGKSTLASLLMGYYAPDEGEIRLD 401

Query: 433 GQHCDDISFDVIRDQIAVVLQQPILFNDTLRHNLTLGGQFSDDVLWQALDIAQLQDVITK 492
           G+    +S  V+R  +A+V Q P++  +++  N+TLG   S++ +W+ L++ QL +++  
Sbjct: 402 GRPLSTLSHAVLRQNVAMVQQDPVVLAESMFVNVTLGRDISEEAVWRVLEVVQLAELVRA 461

Query: 493 LDQGLESQIGRNGIRLSGGQRQRLAIARMVLSNPKFVILDEATSALDTATEAALHLALSK 552
             +GL ++IG  G  LS GQ+Q LAIAR+++  PK +ILDEAT+ +D+ TE A+  AL  
Sbjct: 462 FPEGLHTRIGEQGNNLSTGQKQLLAIARVLVQTPKILILDEATANIDSGTEQAVQKALRI 521

Query: 553 FLHGRTTLIVAHRLSAVKQADLIYVLEDGHVSQSGTHHELLEQEGLYQTLY 603
                T +I+AHRLS + +AD I VL  G   + GTH +LL+Q+G Y  +Y
Sbjct: 522 IREQTTLIIIAHRLSTIVEADTIMVLHHGQTVERGTHDQLLQQQGRYYQMY 572