Pairwise Alignments

Query, 610 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 582 a.a., lipid A ABC transporter ATP-binding protein/permease MsbA from Pantoea agglomerans CFBP13505 P0401

 Score =  255 bits (651), Expect = 4e-72
 Identities = 168/566 (29%), Positives = 288/566 (50%), Gaps = 22/566 (3%)

Query: 46  ATLISVPIPLLMPLMVDEVLLNHPAKGVEVMNQFLPQGWQTATGYIMLTLLMVVV-MRIA 104
           A LI+  + L++    D ++L+       ++   L  G+  A   +ML L +VV+ + + 
Sbjct: 25  AGLIAASVALIINAAGDALMLS-------LLKPLLDDGFGKADRSVMLWLPLVVIGLMLV 77

Query: 105 SQLLNILQSRQFTLVSKTITYEMRRKMIEKLGRISIRQYETRGSGGINAHLITDIETIDQ 164
             + + + S   + VS  +   +RR++   +  + +  ++ + +G + + +  D E +  
Sbjct: 78  RGVTSYISSYCISWVSGNVVMNIRRRLFSHMMGMPVSFFDQQSTGTLLSRITYDSEQVAS 137

Query: 165 FIGSTLSKFLISLLTVIGTAIVLLWLEWRLGLFILLVNPIVIYFSRMLGSQVKHLKKREN 224
                L   +    ++IG  I++ +  W+L L ++++ PIV +  R +  + + + K   
Sbjct: 138 SSSGALVTVVREGASIIGLFIMMFYYSWQLSLILIVLAPIVSFAIRTVSKRFRTISKSMQ 197

Query: 225 QAFERFQNRLVETLDGIYQLRAANKEREFLNRLISDADAVRENADKYAWQSEAAGRLSFL 284
               +      + L G  ++     +     R    ++ +R+   K    S  +  +  L
Sbjct: 198 NTMGQVTTSAEQMLKGHKEVLIFGGQDIESERFSRVSNRMRQQGMKLVSASSISDPIIQL 257

Query: 285 LFLLGFELFRAVAMLMVVFSDLTIGQIFAVFGYLWFMLSPVQELLGIQFSWYAAKAALKR 344
           +  L        A    V   LT G I  VF  +  ++ P++ L  +   +    AA + 
Sbjct: 258 IASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317

Query: 345 INSLLELEEEY----RPISKVNPFTQLGEVDIEINNIHFSYDG-ESQVLNDLSLHIPAGK 399
           + S+L+ E+E     R I++          DIE  ++ F+Y G E   L +++L +PAGK
Sbjct: 318 LFSILDSEQEVDNGTREITRAKG-------DIEFRDVTFTYPGREIPALRNINLSLPAGK 370

Query: 400 KVALVGASGGGKSTLIQLLIGVYRAQSGAIRFNGQHCDDISFDVIRDQIAVVLQQPILFN 459
            VALVG SG GKST+  LL   Y  Q G I  +G    + S   +R+Q+A+V Q   LFN
Sbjct: 371 TVALVGRSGSGKSTMASLLTRFYDIQQGEILLDGHDLREYSLRSLRNQVALVSQNVHLFN 430

Query: 460 DTLRHNLTLGG--QFSDDVLWQALDIAQLQDVITKLDQGLESQIGRNGIRLSGGQRQRLA 517
           DT+ +N+      Q+S + +  A  +A   D I K+D+GL++ IG NG+ LSGGQRQR+A
Sbjct: 431 DTIANNIAYARSEQYSREEIEHAATMAHAMDFINKMDKGLDTMIGENGVLLSGGQRQRIA 490

Query: 518 IARMVLSNPKFVILDEATSALDTATEAALHLALSKFLHGRTTLIVAHRLSAVKQADLIYV 577
           IAR +L +   +ILDEATSALDT +E A+  AL +    RT+L++AHRLS +++AD I V
Sbjct: 491 IARALLRDCPILILDEATSALDTESERAIQSALDELQKNRTSLVIAHRLSTIEKADEIVV 550

Query: 578 LEDGHVSQSGTHHELLEQEGLYQTLY 603
           +EDG + + GTH  LL + G Y  L+
Sbjct: 551 IEDGQIVERGTHQVLLAERGAYAQLH 576