Pairwise Alignments

Query, 610 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 595 a.a., lipid A export permease/ATP-binding protein MsbA from Magnetospirillum magneticum AMB-1

 Score =  231 bits (588), Expect = 9e-65
 Identities = 167/580 (28%), Positives = 279/580 (48%), Gaps = 28/580 (4%)

Query: 29  VKKHRAKLLFANFIAVVATLISVPIPLLMPLMVDEVLLNHPAKGVEVMNQFLPQGWQTAT 88
           ++ +  K++ A F  VV    +    LLM  +V+++         E   +FL        
Sbjct: 24  MRPYMGKVMAAVFCMVVGAAANAGYALLMDPVVNKIF-------TEKRPEFL-------- 68

Query: 89  GYIMLTLLMVVVMRIA-SQLLNILQSRQFTLVSKTITYEMRRKMIEKLGRISIRQYETRG 147
               L L + V+   A   + N  ++   + V   +  +M+ ++   L R+ +  +    
Sbjct: 69  ----LPLALAVLGTFAVKSVCNYGEAVFLSKVGLRVIADMQSRLFAHLMRLDVAFFHANS 124

Query: 148 SGGINAHLITDIETIDQFIGSTLS---KFLISLLTVIGTAIVLLWLEWRLGLFILLVNPI 204
           +G I + L  DI  +   +   L+   K   S++ +IG    + + +WRL  +   + PI
Sbjct: 125 TGRILSRLTNDISQMRFAVSDALTGAGKDASSVIFLIGA---MFYQDWRLSAWTFFIFPI 181

Query: 205 VIYFSRMLGSQVKHLKKRENQAFERFQNRLVETLDGIYQLRAANKEREFLNRLISDADAV 264
            I   R LG +++ +     +   +    L + + GI  ++A   E     ++ +  + +
Sbjct: 182 AILPIRKLGRRMRKVTANTQEHMGQLTTYLEQAVQGIRVVKAYGMEEYEKRKVGALVEML 241

Query: 265 RENADKYAWQSEAAGRLSFLLFLLGFELFRAVAMLMVVFSDLTIGQIFAVFGYLWFMLSP 324
           ++   K A    A+  +  LL  +   +        VV  + T G  F+    L     P
Sbjct: 242 QDLIYKAARVRSASSPIMELLGGIAITVVILYGGTRVVNGETTPGAFFSFITALMLAYRP 301

Query: 325 VQELLGIQFSWYAAKAALKRINSLLELEEEYRPISKVNPFTQLGEVDIEINNIHFSYDGE 384
           ++ L  +  +     AA  R  S+L+ +              L E ++    + F+YDG 
Sbjct: 302 IKSLAAMNTNLQEGLAAASRTFSVLDTQPTIFEKDGAADLVVL-EGNVSFEGVFFTYDGS 360

Query: 385 SQVLNDLSLHIPAGKKVALVGASGGGKSTLIQLLIGVYRAQSGAIRFNGQHCDDISFDVI 444
             VL+ + L +P GK VALVG SG GKST++ LL   Y    G +  +GQ   ++S   +
Sbjct: 361 KAVLDGIDLAVPGGKTVALVGPSGAGKSTVLNLLPRFYDVTDGHVLVDGQDVRNVSLSSL 420

Query: 445 RDQIAVVLQQPILFNDTLRHNLTLGG-QFSDDVLWQALDIAQLQDVITKLDQGLESQIGR 503
           R +IA+V Q+  LF+D++R N+  G    +D+ +  A   A   D I  L +G ++ +G 
Sbjct: 421 RSKIALVSQEITLFDDSIRANIAYGRFGATDEEIEAAARSAAAHDFIVSLPEGYDTVVGE 480

Query: 504 NGIRLSGGQRQRLAIARMVLSNPKFVILDEATSALDTATEAALHLALSKFLHGRTTLIVA 563
            G+ LSGGQRQRLAIAR +L N   ++LDEATSALDT +E  +  AL   + GRTT+++A
Sbjct: 481 RGLNLSGGQRQRLAIARAMLKNAPILLLDEATSALDTESERQVQTALELLMRGRTTIVIA 540

Query: 564 HRLSAVKQADLIYVLEDGHVSQSGTHHELLEQEGLYQTLY 603
           HRLS V  ADLI+VL+ G V +SG H+ L+ + G Y  LY
Sbjct: 541 HRLSTVVNADLIHVLDKGRVIESGDHNALMAKNGTYARLY 580