Pairwise Alignments

Query, 610 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 582 a.a., Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  249 bits (636), Expect = 2e-70
 Identities = 165/562 (29%), Positives = 283/562 (50%), Gaps = 14/562 (2%)

Query: 46  ATLISVPIPLLMPLMVDEVLLNHPAKGVEVMNQFLPQGWQTATGYIMLTLLMVVV-MRIA 104
           A LI   I L++    D  +L+       ++   L  G+      ++L + +VV+ + I 
Sbjct: 25  AGLIVAGIALILNAASDTFMLS-------LLKPLLDDGFGKTDRSVLLWMPLVVIGLMIL 77

Query: 105 SQLLNILQSRQFTLVSKTITYEMRRKMIEKLGRISIRQYETRGSGGINAHLITDIETIDQ 164
             + + + S   + VS  +   MRR++   +  + +  ++ + +G + + +  D E +  
Sbjct: 78  RGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVAS 137

Query: 165 FIGSTLSKFLISLLTVIGTAIVLLWLEWRLGLFILLVNPIVIYFSRMLGSQVKHLKKREN 224
                L   +    ++IG  I++ +  W+L + ++++ PIV    R++  + + + K   
Sbjct: 138 SSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQ 197

Query: 225 QAFERFQNRLVETLDGIYQLRAANKEREFLNRLISDADAVRENADKYAWQSEAAGRLSFL 284
               +      + L G  ++     +     R    ++ +R    K    S  +  +  L
Sbjct: 198 NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 257

Query: 285 LFLLGFELFRAVAMLMVVFSDLTIGQIFAVFGYLWFMLSPVQELLGIQFSWYAAKAALKR 344
           +  L        A    V   LT G I  VF  +  ++ P++ L  +   +    AA + 
Sbjct: 258 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317

Query: 345 INSLLELEEEYRPISKVNPFTQLGEVDIEINNIHFSYDG-ESQVLNDLSLHIPAGKKVAL 403
           + ++L+ E+E     +V         D+E  N+ F+Y G E   L +++L IPAGK VAL
Sbjct: 318 LFAILDSEQEKDEGKRV---IDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVAL 374

Query: 404 VGASGGGKSTLIQLLIGVYRAQSGAIRFNGQHCDDISFDVIRDQIAVVLQQPILFNDTLR 463
           VG SG GKST+  L+   Y    G I  +G    + +   +R+Q+A+V Q   LFNDT+ 
Sbjct: 375 VGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVA 434

Query: 464 HNLTLGG--QFSDDVLWQALDIAQLQDVITKLDQGLESQIGRNGIRLSGGQRQRLAIARM 521
           +N+      ++S + + +A  +A   D I K+D GL++ IG NG+ LSGGQRQR+AIAR 
Sbjct: 435 NNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 494

Query: 522 VLSNPKFVILDEATSALDTATEAALHLALSKFLHGRTTLIVAHRLSAVKQADLIYVLEDG 581
           +L +   +ILDEATSALDT +E A+  AL +    RT+L++AHRLS ++QAD I V+EDG
Sbjct: 495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDG 554

Query: 582 HVSQSGTHHELLEQEGLYQTLY 603
            + + GTH ELL Q G+Y  L+
Sbjct: 555 IIVERGTHSELLAQHGVYAQLH 576