Pairwise Alignments

Query, 610 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 592 a.a., SmdB family multidrug efflux ABC transporter permease/ATP-binding protein from Erwinia tracheiphila SCR3

 Score =  237 bits (605), Expect = 9e-67
 Identities = 178/603 (29%), Positives = 294/603 (48%), Gaps = 40/603 (6%)

Query: 10  LINMTYFNDTISRSWLITQVKKHRAKLLFANFIAVVATLISVPIPLLMPLMVDEVLLNHP 69
           + N+T    T+ R  L+      R  L  A  +  ++    V  P+L+   +D ++  H 
Sbjct: 1   MANLTELLPTLKR--LLRYGHPFRKSLGLAVLLLWISAAAEVLGPVLISYFIDHMVAKH- 57

Query: 70  AKGVEVMNQFLPQGWQT--ATGYIMLTLLMVVVMRIASQLLNILQSRQFTLVSKTITYEM 127
                     +P G     A  YI+L +L        + LL+  QS  F   +  +   +
Sbjct: 58  ---------HMPVGLVAGLAASYILLQVL--------AALLHYSQSLLFNQAAVGVVQRL 100

Query: 128 RRKMIEKLGRISIRQYETRGSGGINAHLITDIETIDQFIGSTLSKFLISLLTVIGTAIVL 187
           R  +++   R  +  Y+T+  G I + +  D E +     + L+  L S   V    + +
Sbjct: 101 RTDVMDAALRQPLSSYDTQPVGQIISRVTNDTEVVRDLYVTVLATVLHSAALVSAMLVAM 160

Query: 188 LWLEWRLGLFILLVNPIVIYFSRMLGSQVKHLKKRENQAFERFQNRLVETLDGIYQLRAA 247
             L+WR+ L  + + P VI    +       + +R         N   E ++G+  ++  
Sbjct: 161 FSLDWRMALVAVAIFPAVIVVMIIYQHYSTPIVRRVRSYLADINNGFNEAINGMSVIQQF 220

Query: 248 NKEREFLNRLISDADAVRENADKYAWQSEAAGRLSFLLFLLGFELFRAVAM--LMVVFS- 304
            ++  F  RL    +A R +   Y  + E      FLL  L   LF A+ +  LM++F  
Sbjct: 221 RQQARFGKRL---CEASRLH---YQARMETLRLDGFLLRPL-LSLFSALILCGLMMLFGF 273

Query: 305 ----DLTIGQIFAVFGYLWFMLSPVQELLGIQFSWYAAKAALKRINSLLELEEEYRPISK 360
                + +G ++    YL  +  P+ EL   Q     A  A +RI  L++  ++    S 
Sbjct: 274 SGQGRIEVGVLYVFINYLGRLNEPLIELTTQQSMLQQALIAGERIFELMDARQQ----SY 329

Query: 361 VNPFTQLGEVDIEINNIHFSYDGESQVLNDLSLHIPAGKKVALVGASGGGKSTLIQLLIG 420
            N    L    IEI+ ++F+Y  + QVL  ++L IP    VALVG +G GKSTL  L++G
Sbjct: 330 GNDDRPLNSGRIEIDGLNFAYRADYQVLRGVNLVIPPRHFVALVGHTGSGKSTLANLIMG 389

Query: 421 VYRAQSGAIRFNGQHCDDISFDVIRDQIAVVLQQPILFNDTLRHNLTLGGQFSDDVLWQA 480
            Y    G IR +G+  + +S  V+R  +A+V Q P++  DT   N+TLG   S+DV+WQ 
Sbjct: 390 YYPLLEGEIRLDGRPINSLSQRVLRKDMALVQQDPVVLADTFFANVTLGRDISEDVVWQV 449

Query: 481 LDIAQLQDVITKLDQGLESQIGRNGIRLSGGQRQRLAIARMVLSNPKFVILDEATSALDT 540
           L+  QL D+   L +G+ + +G  G  LS GQ+Q LA+AR+++++PK +ILDEAT+ +D+
Sbjct: 450 LETVQLADLARHLPEGIYTHLGEQGNTLSVGQKQLLAMARVLVASPKLLILDEATANIDS 509

Query: 541 ATEAALHLALSKFLHGRTTLIVAHRLSAVKQADLIYVLEDGHVSQSGTHHELLEQEGLYQ 600
            TE A+  AL       T + +AHRLS + +AD I+VL  G + + GTH +LL++ G Y 
Sbjct: 510 GTEQAIQKALHLVRQQTTLVAIAHRLSTIIEADTIFVLHRGRIVEQGTHRQLLDEHGRYA 569

Query: 601 TLY 603
            +Y
Sbjct: 570 QMY 572