Pairwise Alignments

Query, 610 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 583 a.a., lipid A ABC transporter ATP-binding protein/permease MsbA from Erwinia tracheiphila SCR3

 Score =  245 bits (625), Expect = 4e-69
 Identities = 157/558 (28%), Positives = 282/558 (50%), Gaps = 11/558 (1%)

Query: 54  PLLMPLMVDEVLLNHPAKG----VEVMNQFLPQGWQTATGYIMLTL-LMVVVMRIASQLL 108
           P    ++V  V L   A G    + ++   L  G+  A   ++L + L V+ + +   + 
Sbjct: 22  PFKTGIIVSSVALVINAAGDVLMMSLLKPLLDDGFGKADPSVLLWMPLAVIGLMLVRGVT 81

Query: 109 NILQSRQFTLVSKTITYEMRRKMIEKLGRISIRQYETRGSGGINAHLITDIETIDQFIGS 168
           + + S   + VS  +   MRR++   +  + +  ++ + +G + + +  D E +     S
Sbjct: 82  SYISSYFISWVSGNVVMSMRRRLFSHMMGMPVAFFDQQSTGTLLSRITYDSEQVASSSSS 141

Query: 169 TLSKFLISLLTVIGTAIVLLWLEWRLGLFILLVNPIVIYFSRMLGSQVKHLKKRENQAFE 228
            L   +    +++G  +++ +  W+L + ++++ P+V +  R +  + +++ K       
Sbjct: 142 ALVTVVREGASIVGLFVMMFYYSWQLSIILIVLAPVVSFAIRYVSKRFRNISKNMQNTMG 201

Query: 229 RFQNRLVETLDGIYQLRAANKEREFLNRLISDADAVRENADKYAWQSEAAGRLSFLLFLL 288
           +      + L G  ++     +     R    ++ +R+   K    S  +  +  L+  L
Sbjct: 202 QVTTSAEQMLKGHKEVLIFGGQEIESERFDRVSNRMRQQGMKLVSASSISDPIIQLIASL 261

Query: 289 GFELFRAVAMLMVVFSDLTIGQIFAVFGYLWFMLSPVQELLGIQFSWYAAKAALKRINSL 348
                   A    V   LT G I  VF  +  ++ P++ L  +   +    AA + + S+
Sbjct: 262 ALAFILYAASFPSVMQTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFSI 321

Query: 349 LELEEEYRPISKVNPFTQLGEVDIEINNIHFSYDGES-QVLNDLSLHIPAGKKVALVGAS 407
           L+ ++E    S+     +  + D+E   + F+Y G     L +++L IP GK VALVG S
Sbjct: 322 LDSKQETDSGSRT---IERAKGDVEFRQVTFTYPGRDVPALQNINLSIPEGKTVALVGRS 378

Query: 408 GGGKSTLIQLLIGVYRAQSGAIRFNGQHCDDISFDVIRDQIAVVLQQPILFNDTLRHNLT 467
           G GKST+  L+   Y  Q G I  +G    + +   +R+Q+A+V Q   LFNDT+ +N+ 
Sbjct: 379 GSGKSTIASLMTRFYDIQQGEILIDGHDLREYTLRSLRNQVALVSQNVHLFNDTVANNIA 438

Query: 468 LGG--QFSDDVLWQALDIAQLQDVITKLDQGLESQIGRNGIRLSGGQRQRLAIARMVLSN 525
                 +S + + +A  +A   D I K+D GL++ IG NG+ LSGGQRQR+AIAR +L +
Sbjct: 439 YARAEHYSREDIEKAAIMAHAMDFIKKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD 498

Query: 526 PKFVILDEATSALDTATEAALHLALSKFLHGRTTLIVAHRLSAVKQADLIYVLEDGHVSQ 585
              +ILDEATSALDT +E A+  AL +    RT+L++AHRLS +++AD I V+EDGH+ +
Sbjct: 499 CPILILDEATSALDTESEHAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGHIVE 558

Query: 586 SGTHHELLEQEGLYQTLY 603
            G+H  LL  +G Y  L+
Sbjct: 559 RGSHKVLLAHKGAYAQLH 576