Pairwise Alignments

Query, 610 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 593 a.a., SmdB family multidrug efflux ABC transporter permease/ATP-binding protein from Escherichia coli ECRC62

 Score =  219 bits (559), Expect = 2e-61
 Identities = 159/577 (27%), Positives = 276/577 (47%), Gaps = 32/577 (5%)

Query: 33  RAKLLFANFIAVVATLISVPIPLLMPLMVDEVLL--NHPAKGVEVMNQFLPQGWQTATGY 90
           R  L  A  +  VA    V  PLL+   +D ++   N P K V  +          A  Y
Sbjct: 22  RKPLGIAVLMMWVAAAAEVSGPLLISYFIDNMVAKNNLPLKMVAGL----------AAAY 71

Query: 91  IMLTLLMVVVMRIASQLLNILQSRQFTLVSKTITYEMRRKMIEKLGRISIRQYETRGSGG 150
           + L L            L+  QS  F   +  +  ++R  +++   R  + +++T+  G 
Sbjct: 72  VGLQLFAAG--------LHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSEFDTQPVGQ 123

Query: 151 INAHLITDIETIDQFIGSTLSKFLISLLTVIGTAIVLLWLEWRLGLFILLVNPIVIYFSR 210
           + + +  D E I     + ++  L S   V    + +  L+WR+ L  +++ P+V+    
Sbjct: 124 VISRVTNDTEVIRDLYVTVVATVLRSAALVGAMLVAMFSLDWRMALVAIMIFPVVLVVMV 183

Query: 211 MLGSQVKHLKKRENQAFERFQNRLVETLDGIYQLRAANKEREFLNRLISDADAVRENADK 270
           +       + +R         +   E ++G+  ++   ++  F  R+    +A R +   
Sbjct: 184 IYQRYSTPIVRRVRAYLADINDGFNEIINGMSVIQQFRQQARFGERM---GEASRSHYMA 240

Query: 271 YAWQSEAAGRLSFLLFLLGFELFRAVAMLMVVFS---DLTIGQIFAVFGYLWFMLSPVQE 327
                   G L   L  L   L     +++  FS    + +G ++A   YL  +  P+ E
Sbjct: 241 RMQTLRLDGFLLRPLLSLFSSLILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIE 300

Query: 328 LLGIQFSWYAAKAALKRINSLLE-LEEEYRPISKVNPFTQLGEVDIEINNIHFSYDGESQ 386
           L   Q     A  A +R+  L++   ++Y      N    L    IE++N+ F+Y  ++ 
Sbjct: 301 LTTQQAMLQQAVVAGERVFELMDGPRQQYG-----NDERPLQSGTIEVDNVSFAYRDDNL 355

Query: 387 VLNDLSLHIPAGKKVALVGASGGGKSTLIQLLIGVYRAQSGAIRFNGQHCDDISFDVIRD 446
           VL +++L +P+   VALVG +G GKSTL  LL+G Y    G IR +G+    +S   +R 
Sbjct: 356 VLKNINLSVPSRNFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSALRQ 415

Query: 447 QIAVVLQQPILFNDTLRHNLTLGGQFSDDVLWQALDIAQLQDVITKLDQGLESQIGRNGI 506
            +A+V Q P++  DT   N+TLG   S++ +WQAL+  QL ++   +  G+ + +G  G 
Sbjct: 416 GVAMVQQDPVVLADTFLANVTLGRDISEERVWQALETVQLAELARSMSDGIYTPLGEQGN 475

Query: 507 RLSGGQRQRLAIARMVLSNPKFVILDEATSALDTATEAALHLALSKFLHGRTTLIVAHRL 566
            LS GQ+Q LA+AR+++  P+ +ILDEAT+++D+ TE A+  AL+      T +++AHRL
Sbjct: 476 NLSVGQKQLLALARVLVETPQILILDEATASIDSGTEQAIQHALAAVREHTTLVVIAHRL 535

Query: 567 SAVKQADLIYVLEDGHVSQSGTHHELLEQEGLYQTLY 603
           S +  AD I VL  G   + GTH +LL  +G Y  +Y
Sbjct: 536 STIVDADTILVLHRGQAVEQGTHQQLLAAQGRYWQMY 572