Pairwise Alignments

Query, 610 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 595 a.a., Lipid A export ATP-binding/permease protein MsbA from Azospirillum sp. SherDot2

 Score =  220 bits (561), Expect = 1e-61
 Identities = 165/595 (27%), Positives = 273/595 (45%), Gaps = 51/595 (8%)

Query: 22  RSWLITQVKKHRAKLLFANFI-AVVATLISVPIPLLMPLMVDEVLLNHPAKGVEVMNQFL 80
           R W    V+ +R KLL +  + AVVA           PL++D       A+         
Sbjct: 24  REW----VRPYRGKLLMSFVLMAVVAATTGA-----YPLLIDRSYAMFSAQD-------- 66

Query: 81  PQGWQTATGYIMLTLLMVVVMRIASQLLNILQSRQFTLVSKTITYEMRRKMIEKLGRISI 140
                   G ++   L +V + I   +    Q+   + + + I  ++R  M   L    +
Sbjct: 67  -------RGMLLAIPLAIVAVTIIKGVSLYSQTVVTSDIVQRIIADVRLAMFTHLQTADM 119

Query: 141 RQYETRGSGGINAHLITDIETIDQFIGSTLSKFLISLLTVIGTAIVLLWLEWRLGLFILL 200
            Q     +G + +  I D++ I   +  TL+  +  +LTVI     + +L+W L L + +
Sbjct: 120 AQLHATPTGSLTSRFINDVDLIRNALTRTLTGLVRDILTVIALVGSMFYLDWLLSLIVFI 179

Query: 201 VNPIVIYFSRMLGSQVKHLKKRENQAFERFQNRLVETLDGIYQLRAANKE--------RE 252
           + PI       +G +++ + +          + L E+L G   ++  N E        R 
Sbjct: 180 IYPIAAVPIVRIGKRLRRVSRDTQAQMGDMTSLLTESLSGARMVKTYNLEDYERARAGRA 239

Query: 253 FLNRLISDADAVRENADKYAWQSEAAGRLSFLLFLLGFELFRAV---AMLMVVFSDLTIG 309
           F    +    AVR           A  R+  ++ +LG      V   A   +   + ++G
Sbjct: 240 FHENYLLTMKAVR-----------ARSRIDPMMEVLGGVAVAGVIAFAGYRMTMGEGSVG 288

Query: 310 QIFAVFGYLWFMLSPVQELLGIQFSWYAAKAALKRINSLLELEEEYRPISKVNPFTQLGE 369
                 G L     PV+ +  +  +     AA +RI  LL+ +          P + +  
Sbjct: 289 AFSGFVGALLMAAQPVRAIGTLNAALQEGLAAAQRIFELLDQQPTIVEQPGAKPLS-VST 347

Query: 370 VDIEINNIHFSYDGESQVLNDLSLHIPAGKKVALVGASGGGKSTLIQLLIGVYRAQSGAI 429
             + +  + FSY+  +  L  + L +PAG  VALVG SG GKST+  L+  +Y    G +
Sbjct: 348 GAVALRGVRFSYEAGADTLKGIDLDVPAGSTVALVGRSGAGKSTVFNLIPRLYDVTGGEV 407

Query: 430 RFNGQHCDDISFDVIRDQIAVVLQQPILFNDTLRHNLTLGGQFS--DDVLWQALDIAQLQ 487
             +GQ     +   +R  +++V Q  +LFNDT+R N+  G   +  DDV+  A   A   
Sbjct: 408 LIDGQDVRGATLRSLRGAVSIVSQDTVLFNDTVRANICFGRLDAGMDDVI-AAAKAAAAH 466

Query: 488 DVITKLDQGLESQIGRNGIRLSGGQRQRLAIARMVLSNPKFVILDEATSALDTATEAALH 547
           D ++KL +G ++ IG  G++LSGG+RQRLA+AR  L +   ++LDEATSALD+ +E  + 
Sbjct: 467 DFVSKLPEGYDTVIGDRGVKLSGGERQRLALARAFLKDAPILLLDEATSALDSESERLVQ 526

Query: 548 LALSKFLHGRTTLIVAHRLSAVKQADLIYVLEDGHVSQSGTHHELLEQEGLYQTL 602
            AL +   GRTTL++AHRL+ V+ AD I V+E G + + G H  LL  +G Y  L
Sbjct: 527 AALERLTEGRTTLVIAHRLATVRNADRIVVMEGGRIIEQGPHEALLAADGAYARL 581