Pairwise Alignments
Query, 4558 a.a., multifunctional autoprocessing toxin RtxA from Vibrio cholerae E7946 ATCC 55056
Subject, 514 a.a., hypothetical protein from Pseudomonas simiae WCS417
Score = 55.8 bits (133), Expect = 3e-11
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 14/148 (9%)
Query: 4276 HVFLGAGDDQSFVFGEGGEIDTGSGRDYVVTSGNFNR---VDTGDDQDYSVTIGNNNQVE 4332
+ + A DQ+ V + T G D V VDTG+ D+ ++ +
Sbjct: 118 YCIIPASRDQALV------VITQGGSDVVQIDDRIENPVIVDTGEGNDFVISTAPLANIS 171
Query: 4333 LGAGNDFANIFGNYNRINAGAGNDVVKL-MGYHAVLNGGDGDDHLIATAISKFSQFNGGE 4391
G G+D +F + I G G+D+++ + GG GDD ++A S +GG+
Sbjct: 172 TGPGHDSVTVFQGSSHIETGPGDDMIQAKFDANITAYGGPGDDEIVAAGA---SFIDGGD 228
Query: 4392 GRDLMVLGGYQNTFKGGTDVDSFVVSGD 4419
G D ++GG+ ++ G D + +GD
Sbjct: 229 GND-FIIGGHGHSILSGGPGDDHIEAGD 255
Score = 53.9 bits (128), Expect = 1e-10
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 20/137 (14%)
Query: 4262 GDGNDTAVVAGRINHVFLGAGDDQSFVFGEGGEIDTGSGRDYVVTSGNFNRVDTGDDQDY 4321
G+GND + + ++ G G D VF I+TG G D + + N G D
Sbjct: 155 GEGNDFVISTAPLANISTGPGHDSVTVFQGSSHIETGPGDDMIQAKFDANITAYGGPGDD 214
Query: 4322 SVTIGNNNQVELGAGNDFANIFGNYNRINAGAGNDVVKLMGYHAVLNGGDGDDHLIATAI 4381
+ + ++ G GNDF I G + H++L+GG GDDH+ A
Sbjct: 215 EIVAAGASFIDGGDGNDF--IIGGHG----------------HSILSGGPGDDHIEAGDA 256
Query: 4382 SKFSQFNGGEGRDLMVL 4398
+ + GEGR+ + L
Sbjct: 257 T--NVIFAGEGRNEVTL 271
Score = 42.0 bits (97), Expect = 5e-07
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 4191 GDGDINISLGNYNFNWGGDGKDLGAYLGDNNNFWGGRGDDVFYATGKSNIFTGGEGNDMG 4250
G + + G+ + G + A N +GG GDD A G S I GG+GND
Sbjct: 175 GHDSVTVFQGSSHIETGPGDDMIQAKFDANITAYGGPGDDEIVAAGASFI-DGGDGNDFI 233
Query: 4251 VLMGRENMMFGGDGNDTAVVAGRINHVFLGAGDDQ 4285
+ +++ GG G+D N +F G G ++
Sbjct: 234 IGGHGHSILSGGPGDDHIEAGDATNVIFAGEGRNE 268
Score = 38.5 bits (88), Expect = 5e-06
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 26 FTGNYSADDG-NNNIVAIGFGGQIHAYGGDDHVTVGSIGAT-VYTGSGNDTVVGGSAYLK 83
F G+ + G ++++ F I AYGG + + GA+ + G GND ++GG
Sbjct: 182 FQGSSHIETGPGDDMIQAKFDANITAYGGPGDDEIVAAGASFIDGGDGNDFIIGGH---- 237
Query: 84 VEDSTGHLIVKGAAGYADINKSGDGNVSFAG 114
GH I+ G G I NV FAG
Sbjct: 238 -----GHSILSGGPGDDHIEAGDATNVIFAG 263
Score = 38.1 bits (87), Expect = 7e-06
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 10/170 (5%)
Query: 1077 AAAKANVVTHVGDATTAAVLAGKGNILTKVGEGTTVGLLISD--VGNVMTHVGDGTTIGI 1134
A V V DA + A + L + +G + + I D V+ G+G I
Sbjct: 103 ALPSTTVTLEVNDAKYCIIPASRDQALVVITQGGSDVVQIDDRIENPVIVDTGEGNDFVI 162
Query: 1135 AKGK-ANLITKVGDGLGVNVTWGQANVFTQVGDGDRYNFAKGEANLITKVGDGQEVSVVQ 1193
+ AN+ T G +VT Q + + G GD AK +AN+ G G + V
Sbjct: 163 STAPLANISTGPGHD---SVTVFQGSSHIETGPGDDMIQAKFDANITAYGGPGDDEIVAA 219
Query: 1194 GEANIITHVGNGDDYTGAWGKANVITKVGHGQNVVLAKGEANIVTQVGDG 1243
G + I G+G+D+ G + I G G + + A G+A V G+G
Sbjct: 220 GASFI--DGGDGNDFI-IGGHGHSILSGGPGDDHIEA-GDATNVIFAGEG 265
Score = 38.1 bits (87), Expect = 7e-06
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 4208 GDGKDLGAYLGDNNNFWGGRG-DDVFYATGKSNIFTGGEGNDMGVLMGRENM-MFGGDGN 4265
G+G D N G G D V G S+I TG G+DM N+ +GG G+
Sbjct: 155 GEGNDFVISTAPLANISTGPGHDSVTVFQGSSHIETG-PGDDMIQAKFDANITAYGGPGD 213
Query: 4266 DTAVVAGRINHVFLGAGDDQSFVFGEGGE--IDTGSGRDYVVTSGNFNRVDTGDDQD 4320
D V AG F+ GD F+ G G + G G D++ N + G+ ++
Sbjct: 214 DEIVAAGA---SFIDGGDGNDFIIGGHGHSILSGGPGDDHIEAGDATNVIFAGEGRN 267
Score = 38.1 bits (87), Expect = 7e-06
Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 4208 GDGKDLGAYLGDNNNFWGGRGDDVFYATGKSNIFT-GGEGNDMGVLMGRENMMFGGDGND 4266
G G D +++ G GDD+ A +NI GG G+D V G + + GGDGND
Sbjct: 173 GPGHDSVTVFQGSSHIETGPGDDMIQAKFDANITAYGGPGDDEIVAAGA-SFIDGGDGND 231
Query: 4267 TAVVAGRINHVFL--GAGDDQSFVFGEGGEIDTGSGRDYV 4304
+ G H L G GDD I G GR+ V
Sbjct: 232 --FIIGGHGHSILSGGPGDDHIEAGDATNVIFAGEGRNEV 269
Score = 35.4 bits (80), Expect = 5e-05
Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 17/144 (11%)
Query: 640 VIVKSGEEGDLTFRGAGLANVLVHQSEQGKMDVYAGGAVNVLVRLGDGQYLAHLLAYGNI 699
VIV +GE D A LAN+ + V+ G + + G G + NI
Sbjct: 150 VIVDTGEGNDFVISTAPLANISTGPGHD-SVTVFQGSS---HIETGPGDDMIQAKFDANI 205
Query: 700 SVQKGSGDSRVVMLGGYNTHTQIGSGNGLWLAAGGFNVMTQVGKGDVAAVLAGGANVLTK 759
+ G GD +V G + G GN + G ++++ G GD + AG A +
Sbjct: 206 TAYGGPGDDEIVAAGA--SFIDGGDGNDFIIGGHGHSILSG-GPGD-DHIEAGDATNVIF 261
Query: 760 MGEGELTSGMLGGANVITHISNDD 783
GEG N +T + DD
Sbjct: 262 AGEGR---------NEVTLLKPDD 276
Score = 35.4 bits (80), Expect = 5e-05
Identities = 22/70 (31%), Positives = 32/70 (45%)
Query: 4191 GDGDINISLGNYNFNWGGDGKDLGAYLGDNNNFWGGRGDDVFYATGKSNIFTGGEGNDMG 4250
G GD I +F GGDG D ++ GG GDD A +N+ GEG +
Sbjct: 210 GPGDDEIVAAGASFIDGGDGNDFIIGGHGHSILSGGPGDDHIEAGDATNVIFAGEGRNEV 269
Query: 4251 VLMGRENMMF 4260
L+ ++M +
Sbjct: 270 TLLKPDDMTY 279
Score = 34.3 bits (77), Expect = 1e-04
Identities = 35/147 (23%), Positives = 54/147 (36%), Gaps = 23/147 (15%)
Query: 4226 GRGDDVFYATGKSNIFTGGEGNDMGVLMGRENMMFGGDGNDTAVVAGRINHVFLGAGDDQ 4285
G G+D +T + G G+D + + + G G+D N G D
Sbjct: 155 GEGNDFVISTAPLANISTGPGHDSVTVFQGSSHIETGPGDDMIQAKFDANITAYGGPGDD 214
Query: 4286 SFVFGEGGEIDTGSGRDYVVTSGNFNRVDTGDDQDYSVTIGNNNQVELGAGNDFANIFGN 4345
V ID G G D+++ G+ + + +G G G+D
Sbjct: 215 EIVAAGASFIDGGDGNDFII-GGHGHSILSG-----------------GPGDDHIEAGDA 256
Query: 4346 YNRINAGAGNDVVKL-----MGYHAVL 4367
N I AG G + V L M YH++L
Sbjct: 257 TNVIFAGEGRNEVTLLKPDDMTYHSLL 283
Score = 32.7 bits (73), Expect = 3e-04
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 34 DGNNNIVAIGFGGQIHAYG-GDDHVTVGSIGATVYTGSGNDTVVGGSAYLKVEDSTGHLI 92
DGN+ I+ G G I + G GDDH+ G ++ G G + V LK +D T H +
Sbjct: 228 DGNDFIIG-GHGHSILSGGPGDDHIEAGDATNVIFAGEGRNEV----TLLKPDDMTYHSL 282
Query: 93 V 93
+
Sbjct: 283 L 283
Score = 31.2 bits (69), Expect = 9e-04
Identities = 69/308 (22%), Positives = 125/308 (40%), Gaps = 46/308 (14%)
Query: 1131 TIGIAKGKANLITKVGDGLGVNVTWGQANVFTQVGDGDRYNFAKGEANLITKVGDGQEVS 1190
T+ + K +I D V +T G ++V Q+ D + E +I G+G +
Sbjct: 110 TLEVNDAKYCIIPASRDQALVVITQGGSDV-VQIDD-------RIENPVIVDTGEGNDFV 161
Query: 1191 VVQGE-ANIITHVGNGDDYTGAWGKANVITKVGHGQNVVLAKGEANIVTQVGDGDSFNAL 1249
+ ANI T G+ D T G +++ T G G +++ AK +ANI G GD + +
Sbjct: 162 ISTAPLANISTGPGH-DSVTVFQGSSHIET--GPGDDMIQAKFDANITAYGGPGD--DEI 216
Query: 1250 WSKGNIVTKVGDGMQVTAAKGQANITTTVGNGLNVTAAYGDANINTKVGDGVSVNVAWGK 1309
+ G GDG N G+G ++ + G + + + GD +V A
Sbjct: 217 VAAGASFIDGGDG----------NDFIIGGHGHSILSG-GPGDDHIEAGDATNVIFA--- 262
Query: 1310 YNINTKVGDGLN-VAVMKGKANANIHVGDGLNINASYAQNNVAIKVGNGDFYSL-AVASS 1367
G+G N V ++K D + ++ + ++ + ++ L A A
Sbjct: 263 -------GEGRNEVTLLK---------PDDMTYHSLLTELSIKFPTSSEEWDRLNAFAPG 306
Query: 1368 NTSSNKLSALFDNIKQTVLGVGGSQAINYLVQGDEASSSGTHKGRGAIATPEITKLDGFQ 1427
++ L NI+++ + V GS + D + + GR +A + L+
Sbjct: 307 EPATGNLQVEPGNIQESGVTVVGSPQFVERINDDLRLLNTSPTGRQLLAVLQRAALESGI 366
Query: 1428 MDAIKEVS 1435
AI E+S
Sbjct: 367 PVAINELS 374
Score = 30.0 bits (66), Expect = 0.002
Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 21/127 (16%)
Query: 34 DGNNNIVAIGFGGQIHAYGGDDHVTVGSIGATVYTGSGNDTVVGGSAYLKVEDSTGHLIV 93
+GN+ +++ I G D VTV + + TG G+D +
Sbjct: 156 EGNDFVISTAPLANISTGPGHDSVTVFQGSSHIETGPGDDMIQ----------------A 199
Query: 94 KGAAGYADINKSGDGNVSFAGAA---GGVSIDH-LGNHGDVSYGGAAAYNGITRKGLSGN 149
K A GD + AGA+ GG D +G HG G + I G + N
Sbjct: 200 KFDANITAYGGPGDDEIVAAGASFIDGGDGNDFIIGGHGHSILSGGPGDDHI-EAGDATN 258
Query: 150 VTFAGAG 156
V FAG G
Sbjct: 259 VIFAGEG 265