Pairwise Alignments

Query, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., Multidrug resistance ABC transporter ATP-binding/permease protein BmrA from Xanthobacter sp. DMC5

 Score =  248 bits (632), Expect = 8e-70
 Identities = 173/553 (31%), Positives = 277/553 (50%), Gaps = 12/553 (2%)

Query: 166 LFSFVLQILALISPLFFQVVMDKVLVHQAWSTLDVLVFGLVITGVIEVVLRGLREYQYAH 225
           L +  L  LAL  P+  + ++D          +D     LV    +  +    R Y    
Sbjct: 51  LLAAALATLAL--PIAVRRMIDFGFAEDHAGLVDQYFGVLVAVAAVLALASAARYYLVTT 108

Query: 226 TANRIDIQLGLKLVQHLFGLPLMFFKSRQVGAIVTRVRELDTIREFLTGSMFTLTVELLF 285
              R+   L   +   L  L   F+ S + G + +R+    T  +   G+  +  +  L 
Sbjct: 109 LGERVVSDLRTAVFARLVTLDGAFYDSARSGELTSRLTADTTQLKSAVGASASTALRNLM 168

Query: 286 MFVFLYVMSLLSAP-LTGLFIATVPCYVLLAWWLTPRMQAAIEKQFSHAAANTS-FLTET 343
           M +    M ++++P L+GL +  +P  ++L    + R    + +Q     A+ S +  E 
Sbjct: 169 MCIGSVAMMVVTSPRLSGLVLVAIPI-IVLPLMASGRKVRRLTRQAQDTLADASAYAAEA 227

Query: 344 VAGSETLKSLAVEPRFIRRWDEQTEKMVTTGYDVQQLNNRSNHLVQLLQKITSVAILWLG 403
           +     L++ + E    +R+D   E+         Q       +   L   + VA+LW G
Sbjct: 228 LNSMRALQAASAEGVARQRFDGAVEEAFGAARQATQARGWLTGIAIFLVFGSVVAVLWAG 287

Query: 404 ATEVLSLEMTIGQLIAFNMMTNHIAQPLARMVELWGQFIQTRVAIEKLGDMLNLPVEQHT 463
           A  VL+  MT G L  F +     A  L  + E WG+      A E++G++L +  +   
Sbjct: 288 AQSVLAGTMTSGALGQFVLYAVLAAASLGNLSETWGEMSAAAGAAERIGELLKVEPQVRP 347

Query: 464 GSDNVT----ISGAISFKNILFRY--QPDIPPTINDLSLDIRAGETLGVVGTSGSGKSTL 517
            +  V     ISGAI F  + F Y  +PD    +  ++  IR GE + +VG SG+GKST+
Sbjct: 348 PARPVPLPARISGAIRFDEVSFSYPTRPD-QSALAAIAFSIRPGERVALVGPSGAGKSTV 406

Query: 518 ARLLLRLYSPEQGSITIDGIPLNHINVQQLRQRVGVVLQENFLFHKSVSENIAQSKPEAS 577
            +LL R Y P+ G I +DGI +   +   +R+++ +V QE  +F  SV  NI   +PEA+
Sbjct: 407 FQLLERFYDPQAGRILLDGIDIREADPVAVRRQMALVPQEVAIFADSVRANIRLGRPEAT 466

Query: 578 LEEIIEAAKLSGAHDFILKLPMGYDTVLAEGGQSLSGGQRQRLAIARTLLSDPKVLILDE 637
             E+ EA + +   +F+ +LP G+DT++ E G  LSGGQRQR+ IAR +L    +L+LDE
Sbjct: 467 DAEVEEAGRAALVDEFVARLPQGWDTMVGERGVMLSGGQRQRIVIARAILRGAPILLLDE 526

Query: 638 ATSALDDESQAVIQANMASIARGRTVITIAHRLSTVRDCDRIIVLHQGTIVEQGSHQQLL 697
           ATSALD ES+ ++Q  +     GRT + IAHRLSTV   DRI+V+  G I+++G+H +L+
Sbjct: 527 ATSALDAESETLVQTALERSMEGRTTLVIAHRLSTVLSADRILVMEAGRIMDEGTHAELV 586

Query: 698 AYGKQYKQLWQLQ 710
           A G  Y +L QLQ
Sbjct: 587 AKGGLYARLAQLQ 599