Pairwise Alignments

Query, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 705 a.a., Type I secretion system ATPase, LssB family LapB from Variovorax sp. SCN45

 Score =  276 bits (706), Expect = 3e-78
 Identities = 181/610 (29%), Positives = 311/610 (50%), Gaps = 30/610 (4%)

Query: 97  LPFITAKTNKDKCLIQRPNKETPEVISSHELNSTWNKKSLVIQQAQSRFDITWFIPEFLQ 156
           LP    + +  +  + RPN   P+      +                 +   WF    L+
Sbjct: 109 LPLAELRLHAKRVAVLRPNTAVPDARVDDYIKP---------------YKANWFWAIALR 153

Query: 157 HKRVLSEILLFSFVLQILALISPLFFQVVMDKVLVHQAWSTLDVLVFGLVITGVIEVVLR 216
             R   +I+L S    +LAL S +F   + D+V+  Q+  TL VL  G+++  V E +LR
Sbjct: 154 DWRRYGDIVLASMFANVLALASMIFSMQIYDRVVPAQSEPTLWVLFGGVMLAVVFEFMLR 213

Query: 217 GLREYQYAHTANRIDIQLGLKLVQHLFGLPLMF---FKSRQVGAIVTRVRELDTIREFLT 273
             R     H ++ I  +  LK+   +FG  L      +S+  G+ + +VRE++ +RE LT
Sbjct: 214 VSR----THISDVIGKRADLKVSDVVFGHALRLRTDARSKSTGSFIAQVREVEQVRELLT 269

Query: 274 GSMFTLTVELLFMFVFLYVMSLLSAPLTGLFIATVPCYVLLAWWLTPRMQAAIEKQFSHA 333
            +  +   +L F  +FL V+ L++ PL  + +A VP  V+    +   +     +    +
Sbjct: 270 STTISAVADLPFFLLFLVVLWLVAGPLALVALAAVPLLVIPGLLIQKPLARLASEGMRES 329

Query: 334 AANTSFLTETVAGSETLKSLAVEPRFIRRWDEQTEKMVTTGYDVQQ--LNNRSNHLVQLL 391
           A   + L E V G E +K +  EPRF  +W+   +  V+ G  ++Q  L +      Q +
Sbjct: 330 ALRNALLVEAVEGIEDIKLMRAEPRFQNQWNHVND--VSAGVSMRQRFLTSLLMTWTQEV 387

Query: 392 QKITSVAILWLGATEVLSLEMTIGQLIAFNMMTNHIAQPLARMVELWGQFIQTRVAIEKL 451
           Q I    +L  G   V+  +MT G L+  +++ + +  PLA++  ++ ++ Q +VA   L
Sbjct: 388 QTIVYAVVLLAGCFLVMRGDMTTGALVGSSILASRMISPLAQLSGVFARWQQAKVARAGL 447

Query: 452 GDMLNLPVEQHTGSDNV---TISGAISFKNILFRY-QPDIPPTINDLSLDIRAGETLGVV 507
             ++  PV+Q  G+  V    + G  +   + FRY + D  P +    L I+AG+ + ++
Sbjct: 448 DQLMQRPVDQADGARLVHAPALHGNYALAGVEFRYGKEDKSPALTIAQLQIQAGDKVALL 507

Query: 508 GTSGSGKSTLARLLLRLYSPEQGSITIDGIPLNHINVQQLRQRVGVVLQENFLFHKSVSE 567
           G  GSGKSTL +LL  L SP+QG + +D + L+ I+   LR+ +G++ Q   LFH S+ E
Sbjct: 508 GRMGSGKSTLLQLLAGLQSPQQGHVALDALDLSLIDPADLRRDMGLLTQNARLFHGSIRE 567

Query: 568 NIAQSKPEASLEEIIEAAKLSGAHDFILKLPMGYDTVLAEGGQSLSGGQRQRLAIARTLL 627
           N+    P A+ +++ EA  ++GA  F+     G D ++ EGG  LSGGQRQ L +ARTL+
Sbjct: 568 NVTMGMPLATDDQVFEAVAMAGALSFLQSRAEGLDELIHEGGLGLSGGQRQALLLARTLI 627

Query: 628 SDPKVLILDEATSALDDESQAVIQANMASIARGRTVITIAHRLSTVRDCDRIIVLHQGTI 687
             P +++LDE T+  D+ ++  +  +M +    RT++   HR+  ++  DRI+V+  G I
Sbjct: 628 RQPSIVLLDEPTAHFDEVTERHVIDSMGAWLGPRTLVVATHRMPVLQWVDRIVVIDGGRI 687

Query: 688 VEQGSHQQLL 697
           V  GS  Q+L
Sbjct: 688 VMDGSKDQVL 697