Pairwise Alignments

Query, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., Efflux ABC transporter, permease/ATP-binding protein from Variovorax sp. SCN45

 Score =  269 bits (687), Expect = 3e-76
 Identities = 173/473 (36%), Positives = 262/473 (55%), Gaps = 15/473 (3%)

Query: 249 FFKSRQVGAIVTRVRELDTIREFLTGSMFTLTVELLFMFVFLYVMSLLSAPLTGLFIATV 308
           FF++ Q G +++R+    T+ + + GS  ++ +    M V    + + + P   + +  +
Sbjct: 115 FFETTQTGEVLSRLTADTTLVQTVVGSSLSMGLRNAVMGVGALAVLVWTNPYVMVQVLGI 174

Query: 309 PCYVLL-AWWLTPRMQAAIEKQFSHAAANTSFLTETVAGSETLKSLAVEPRFIRRWDEQT 367
              V+L + W   R++          A +++   E +     ++S   E R   R++  T
Sbjct: 175 LVLVVLPSMWFGRRVRKLSRASQDRVADSSAIAAEVLNAIPVVQSYTAEGREASRFNGST 234

Query: 368 EKMVTTGYDVQQLNNRSNHLVQLLQKITSVAILW---LGATEVLSLEMTIGQLIAFNMMT 424
           E    T   V++   RS  LV  +   TS A+LW    G   VL  ++T G L    +  
Sbjct: 235 ENAFRTA--VRRTKARSV-LVAFIIIATSAALLWGLYQGTQAVLRGDITAGHLGQTVVYV 291

Query: 425 NHIAQPLARMVELWGQFIQTRVAIEKLGDMLNLPVEQHTGSDNVTI-----SGAISFKNI 479
             +A   A + E++G  ++   A E+L ++L+ P    + ++           AI F  +
Sbjct: 292 AILASATAVLGEVYGDLLRAAGATERLMELLHAPSAIFSPANPAVTPVPAAGSAIRFDAV 351

Query: 480 LFRYQPDIP--PTINDLSLDIRAGETLGVVGTSGSGKSTLARLLLRLYSPEQGSITIDGI 537
            F Y P  P  P + D SLD+  GET+ +VG+SG+GKST+ +LLLR Y P+ G + +DG 
Sbjct: 352 TFHY-PSRPGTPALRDFSLDVAPGETVALVGSSGAGKSTVFQLLLRYYDPQSGRLILDGA 410

Query: 538 PLNHINVQQLRQRVGVVLQENFLFHKSVSENIAQSKPEASLEEIIEAAKLSGAHDFILKL 597
           PL  + +  LR R+G+V Q+  +F  S  ENI   +PEA+ EE+  AA+ + AHDF+  L
Sbjct: 411 PLASLALSDLRTRIGLVPQDAVIFSTSAFENIRYGRPEATAEEVHAAARAAFAHDFLQAL 470

Query: 598 PMGYDTVLAEGGQSLSGGQRQRLAIARTLLSDPKVLILDEATSALDDESQAVIQANMASI 657
           P GYDT L E G  LSGGQRQR+AIAR +L +P +L+LDEATSALD ES+ ++QA + S 
Sbjct: 471 PEGYDTFLGERGVRLSGGQRQRIAIARAILKNPPLLLLDEATSALDAESERMVQAALESA 530

Query: 658 ARGRTVITIAHRLSTVRDCDRIIVLHQGTIVEQGSHQQLLAYGKQYKQLWQLQ 710
             GRT + IAHRL+TV+  DRIIVL  G IVEQG+H  L+A G  Y +L  LQ
Sbjct: 531 MEGRTTLVIAHRLATVQKADRIIVLDHGGIVEQGTHAALVAQGGVYARLAALQ 583