Pairwise Alignments

Query, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 722 a.a., Protein secretion ABC efflux system, permease and ATP-binding protein from Pseudomonas putida KT2440

 Score =  292 bits (748), Expect = 3e-83
 Identities = 176/557 (31%), Positives = 298/557 (53%), Gaps = 4/557 (0%)

Query: 145 FDITWFIPEFLQHKRVLSEILLFSFVLQILALISPLFFQVVMDKVLVHQAWSTLDVLVFG 204
           +D  WF    L+  R   ++++ S V  +LAL   LF   V D+V+  ++  TL VL  G
Sbjct: 160 YDRHWFARIVLRDLRPYGQVMIASLVANVLALAGVLFSMQVYDRVIPAESLPTLYVLFGG 219

Query: 205 LVITGVIEVVLRGLREYQYAHTANRIDIQLGLKLVQHLFGLPLMFFKSRQVGAIVTRVRE 264
           +V+  V +  +R LR         R D+++   +  H   L     + +  G+ ++++RE
Sbjct: 220 VVLALVFDFSMRLLRLKVTDLLGKRADLRVSDLVYGHALRLRNSV-RPKSTGSFISQLRE 278

Query: 265 LDTIREFLTGSMFTLTVELLFMFVFLYVMSLLSAPLTGLFIATVPCYVLLAWWLTPRMQA 324
           L++IR+ +T S  T+  +L F  +FL+V  L+   L  + +  +   VL       R+  
Sbjct: 279 LESIRDLITSSTATVLADLPFFLLFLFVFWLIGGVLVFIPLVALLAMVLPGLLAQRRLAR 338

Query: 325 AIEKQFSHAAANTSFLTETVAGSETLKSLAVEPRFIRRWDEQTEKMVTTGYDVQQLNNRS 384
                   +A   + L E++ G + +K+L  E RF R+W++       T   ++ L N  
Sbjct: 339 LANASMRESALRNAMLVESIQGLDEIKALQAEARFERQWNQYNAACAHTNLRLRTLTNGL 398

Query: 385 NHLVQLLQKITSVAILWLGATEVLSLEMTIGQLIAFNMMTNHIAQPLARMVELWGQFIQT 444
               Q +Q      ++ +GA  V++ ++T G L+A +M+++ +  PLA++  +  ++ Q 
Sbjct: 399 VTWTQNVQGAVFAVVIVIGAPMVIAGDLTTGSLVAASMLSSRMMAPLAQLTHVLTRWQQA 458

Query: 445 RVAIEKLGDMLNLPVEQHTGSDNV---TISGAISFKNILFRYQPDIPPTINDLSLDIRAG 501
           +VA++ L  ++  PV+   G   V    I G    +   FRY  D PP +N   LDI+ G
Sbjct: 459 KVALQGLDKLMQSPVDHPEGEARVHLPAIHGEYRLRQANFRYSEDYPPVLNIGRLDIQPG 518

Query: 502 ETLGVVGTSGSGKSTLARLLLRLYSPEQGSITIDGIPLNHINVQQLRQRVGVVLQENFLF 561
           E + V+G +G+GKSTL + L       QG I++DGI + H++   LR+ VG++ Q   LF
Sbjct: 519 ERIAVLGRNGAGKSTLLQALGGAMDLVQGEISLDGIAMAHLDPADLRRDVGLLPQYARLF 578

Query: 562 HKSVSENIAQSKPEASLEEIIEAAKLSGAHDFILKLPMGYDTVLAEGGQSLSGGQRQRLA 621
           H ++ EN+     +AS +E++ A   +GA DF+ +LP G D ++ EGG  LSGGQRQ L 
Sbjct: 579 HGTLRENLTLGAGQASDQELVAALAATGALDFVRRLPKGMDHLILEGGLGLSGGQRQALV 638

Query: 622 IARTLLSDPKVLILDEATSALDDESQAVIQANMASIARGRTVITIAHRLSTVRDCDRIIV 681
           ++R L+  P+VL+LDE T++LDD ++  +  N+    +GRT++   HRLS ++  DRI+V
Sbjct: 639 LSRLLVRQPQVLLLDEPTASLDDMTERKLLDNLERFCQGRTLVIATHRLSVLQRVDRILV 698

Query: 682 LHQGTIVEQGSHQQLLA 698
           L  G IV   +    LA
Sbjct: 699 LDAGRIVIDDARDAALA 715