Pairwise Alignments

Query, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., Lipid A export ATP-binding/permease protein MsbA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  261 bits (668), Expect = 6e-74
 Identities = 187/581 (32%), Positives = 301/581 (51%), Gaps = 26/581 (4%)

Query: 151 IPEFLQHKRVLSEILLFSFVLQILALISPLFFQVVMDKVLVHQ-AWSTLDVLVFGLVIT- 208
           +P   Q+K  +   L F    ++  +  PL  + ++D + +   +  ++ V+  GL++  
Sbjct: 37  LPYLWQYKVRVVLALAFMVAAKMANVGVPLLLKQLVDAMTIRPGSVESMLVVPLGLLLAY 96

Query: 209 GVIEV---VLRGLREYQYAHTANRIDIQLGLKLVQHLFGLPLMFFKSRQVGAIVTRV--- 262
           G++ +   V   LRE  +A         + L++  HL  L L F   RQ G +   +   
Sbjct: 97  GLLRLSTSVFTELRELVFAKATEGATRSISLQVFGHLHALSLRFHLERQTGGMTRDIERG 156

Query: 263 -RELDTIREFLTGSMFTLTVELLFMFVFL---YVMSLLSAPLTGLFIATVPCYVLLAWWL 318
            R + ++  +   S+F   +E++ +   L   + M  +   L  L +  V   VL+  W 
Sbjct: 157 TRGVQSLISYSLYSIFPTLIEVIMVLTLLGTQFDMGYVWITLVAL-VLYVTFTVLVTEWR 215

Query: 319 TPRMQAAIEKQFSHAAANTSFLTETVAGSETLKSLAVEPRFIRRWDEQTEKMVTTGYDVQ 378
           T   +   E +    + + S   +++   ET+K    E    RR+DE  EK+       Q
Sbjct: 216 TQFRRKMNELE----STSQSRAIDSLLNYETVKYFNNEGFEGRRYDEALEKLRRARIKSQ 271

Query: 379 QLNNRSNHLVQLLQKITSVAILWLGATEVLSLEMTIGQLIAFNMMTNHIAQPLARMVELW 438
              +  N   QL+  +  V +LW     V+S ++T+G L+  N     +  PL  +  L+
Sbjct: 272 TTLSMLNAGQQLVIAVALVLMLWRATQGVVSGQLTLGDLVMVNAFMIQLYIPLGFLGVLY 331

Query: 439 GQFIQTRVAIEKLGDMLNLPVE--QHTGSDNVTISG--AISFKNILFRYQPDIPPTINDL 494
            +  Q+   +EK+  +L    E     G+  + ++G  A+ F+N+ F Y+P     ++ +
Sbjct: 332 REIKQSLTDLEKMFALLEKEREIADVPGAQPLQLAGPPAVRFENVRFSYEP-AREILHGI 390

Query: 495 SLDIRAGETLGVVGTSGSGKSTLARLLLRLY----SPEQGSITIDGIPLNHINVQQLRQR 550
           S DI  G+T+ VVG SGSGKSTLARLL R Y    + E G I IDG  +  +    +RQ 
Sbjct: 391 SFDIPPGKTVAVVGPSGSGKSTLARLLYRFYDVSNAAEGGRILIDGQDIKAVTQASVRQA 450

Query: 551 VGVVLQENFLFHKSVSENIAQSKPEASLEEIIEAAKLSGAHDFILKLPMGYDTVLAEGGQ 610
           +G+V Q+  LF+ ++  NI   +P+A  E  + AA+ +  H FI  LP+GY T++ E G 
Sbjct: 451 IGIVPQDTVLFNDTIEYNILYGRPDAGHEAAVRAAQAAHIHPFIQHLPLGYATMVGERGL 510

Query: 611 SLSGGQRQRLAIARTLLSDPKVLILDEATSALDDESQAVIQANMASIARGRTVITIAHRL 670
            LSGG++QR+AIARTLL +P ++I DEATSALD  ++  IQA + S AR +T + IAHRL
Sbjct: 511 KLSGGEKQRVAIARTLLKNPPIVIFDEATSALDSANERAIQAELRSAARNKTTLVIAHRL 570

Query: 671 STVRDCDRIIVLHQGTIVEQGSHQQLLAYGKQYKQLWQLQQ 711
           STV D   I+VL  G IVE+G+H +L+A    Y  +W LQQ
Sbjct: 571 STVVDAHEILVLVNGDIVERGTHAELVARAGVYAGMWALQQ 611