Pairwise Alignments

Query, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., Lipid A export ATP-binding/permease protein MsbA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  290 bits (743), Expect = 1e-82
 Identities = 196/596 (32%), Positives = 309/596 (51%), Gaps = 18/596 (3%)

Query: 139 QQAQSRFDITWFIPEFLQHKRVLSEILLFSFVLQILA----LISPLFFQVVMDKVLV-HQ 193
           Q+A      TW +    +  R     LL  F+L + +    L+ P     +MD+VL+  Q
Sbjct: 84  QEAPQPPPSTWVLLRLWRFARPYRWTLLSGFLLTLASTAATLVPPYLTIPLMDRVLIPFQ 143

Query: 194 AWSTLDV-----LVFGLVITGVIEVVLRGLREYQYAHTANRIDIQLGLKLVQHLFGLPLM 248
               +D      L+ GL+ + ++   L   R +  A  + RI   L      HL  L L 
Sbjct: 144 NGQAIDTGLVLALLGGLLGSALLAWSLGWARTWLLALVSERISSDLRTTTFDHLLELSLD 203

Query: 249 FFKSRQVGAIVTRV-RELDTIREFLTGSMFTLTVELLFMFVFLYVMSLLSAPLTGLFIAT 307
           +F S++ G ++ R+  E D I  FL+        ++L + +   ++  ++  L    +  
Sbjct: 204 YFSSKRTGDLMARIGSETDRISVFLSLHALDFLTDVLMIGMTAVILFSINPWLALATLVP 263

Query: 308 VPCYVLLAWWLTPRMQAAIEKQFSHAAANTSFLTETVAGSETLKSLAVEPRFIRRWDEQT 367
           +P    +   +  R++   EK        T+ L +T+ G   +K+ A E R  RR+    
Sbjct: 264 LPFIGWMIHLVRDRLRTGFEKIDRVWGEVTNVLADTIPGIRVVKAFAQEAREARRFRRAN 323

Query: 368 EKMVTTGYDVQQLNNRSNHLVQLLQKITSVAILWLGATEVLSLEMTIGQLIAFNMMTNHI 427
           E  +     + +  +     V LL +I  + +   G   V   E+T+G L AF       
Sbjct: 324 EHNLAVNDRINKTWSLFTPTVTLLTEIGLLVVWAFGIWLVSQSEITVGVLTAFIAYIGRF 383

Query: 428 AQPLARMVELWGQFIQTRVAIEKLGDML----NLPVEQHTGSDNVTISGAISFKNILFRY 483
              L  M  +     +     +++ D+L    N+P E         + G +  +N+ FRY
Sbjct: 384 YGRLDSMSRIVSVTQKAASGAKRIFDILDHVSNVP-EPTQPVPLTRVQGGLQMENVSFRY 442

Query: 484 QPDIPPTINDLSLDIRAGETLGVVGTSGSGKSTLARLLLRLYSPEQGSITIDGIPLNHIN 543
                  I +LSLDIR GE +G+VG SGSGKSTL  LL R Y   +G I IDG  +  + 
Sbjct: 443 GSRT--VIRNLSLDIRPGEMIGLVGHSGSGKSTLVNLLCRFYDVSEGGIRIDGTDIRRVG 500

Query: 544 VQQLRQRVGVVLQENFLFHKSVSENIAQSKPEASLEEIIEAAKLSGAHDFILKLPMGYDT 603
           V   R+ +G+VLQE FLF  +++ENIA  +P A+  EI+ AA+ + AH+FIL+LP GYD+
Sbjct: 501 VADFRRHIGLVLQEPFLFFGTIAENIAYGRPGATRTEIVAAARAAHAHEFILRLPQGYDS 560

Query: 604 VLAEGGQSLSGGQRQRLAIARTLLSDPKVLILDEATSALDDESQAVIQANMASIARGRTV 663
           ++ E GQ LSGG+RQR++IAR LL DP++LILDEATS++D E++  IQ  + ++ +GRT 
Sbjct: 561 LVGERGQGLSGGERQRISIARALLIDPRILILDEATSSVDTETEKEIQKALDNLVQGRTT 620

Query: 664 ITIAHRLSTVRDCDRIIVLHQGTIVEQGSHQQLLAYGKQYKQLWQLQQELKQEEAS 719
           I IAHRLST+R  DR++V+ +G +VE G H +L+A    Y +L++ Q   +QE A+
Sbjct: 621 IAIAHRLSTLRKADRLVVMDRGQVVEIGPHDELMAQRGAYWRLYEAQARKEQEAAA 676