Pairwise Alignments

Query, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 582 a.a., Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  254 bits (648), Expect = 1e-71
 Identities = 163/539 (30%), Positives = 288/539 (53%), Gaps = 12/539 (2%)

Query: 182 FQVVMDKVLVHQAWSTLD---VLVFGLVITGVIEVVLRGLREYQYAH----TANRIDIQL 234
           F + + K L+   +   D   +L   LV+ G++  +LRG+  Y  ++     + ++ + +
Sbjct: 43  FMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLM--ILRGITSYISSYCISWVSGKVVMTM 100

Query: 235 GLKLVQHLFGLPLMFFKSRQVGAIVTRVR-ELDTIREFLTGSMFTLTVELLFMFVFLYVM 293
             +L  H+ G+P+ FF  +  G +++R+  + + +    +G++ T+  E   +     +M
Sbjct: 101 RRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMM 160

Query: 294 SLLSAPLTGLFIATVPCYVLLAWWLTPRMQAAIEKQFSHAAANTSFLTETVAGSETLKSL 353
              S  L+ + +   P   +    ++ R ++  +   +     T+   + + G + +   
Sbjct: 161 FYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIF 220

Query: 354 AVEPRFIRRWDEQTEKMVTTGYDVQQLNNRSNHLVQLLQKITSVAILWLGATEVLSLEMT 413
             +    +R+D+ + KM   G  +   ++ S+ ++QL+  +    +L+  +   +   +T
Sbjct: 221 GGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLT 280

Query: 414 IGQLIAFNMMTNHIAQPLARMVELWGQFIQTRVAIEKLGDMLNLPVEQHTGSDNVT-ISG 472
            G +         + +PL  +  +  QF +   A + L  +L+   E+  G   +   +G
Sbjct: 281 AGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATG 340

Query: 473 AISFKNILFRYQPDIPPTINDLSLDIRAGETLGVVGTSGSGKSTLARLLLRLYSPEQGSI 532
            + F+N+ F Y     P + +++L I AG+T+ +VG SGSGKST+A L+ R Y  ++G I
Sbjct: 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 400

Query: 533 TIDGIPLNHINVQQLRQRVGVVLQENFLFHKSVSENIAQSKPEA-SLEEIIEAAKLSGAH 591
            +DG  L    +  LR +V +V Q   LF+ +V+ NIA ++ E  S E+I EAA+++ A 
Sbjct: 401 LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAM 460

Query: 592 DFILKLPMGYDTVLAEGGQSLSGGQRQRLAIARTLLSDPKVLILDEATSALDDESQAVIQ 651
           DFI K+  G DT++ E G  LSGGQRQR+AIAR LL D  +LILDEATSALD ES+  IQ
Sbjct: 461 DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520

Query: 652 ANMASIARGRTVITIAHRLSTVRDCDRIIVLHQGTIVEQGSHQQLLAYGKQYKQLWQLQ 710
           A +  + + RT + IAHRLST+   D I+V+  G IVE+G+H +LLA    Y QL ++Q
Sbjct: 521 AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579