Pairwise Alignments

Query, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 583 a.a., lipid A ABC transporter ATP-binding protein/permease MsbA from Erwinia tracheiphila SCR3

 Score =  246 bits (628), Expect = 2e-69
 Identities = 158/516 (30%), Positives = 270/516 (52%), Gaps = 6/516 (1%)

Query: 198 LDVLVFGLVITGVIEVVLRGLREYQYAHTANRIDIQLGLKLVQHLFGLPLMFFKSRQVGA 257
           + + V GL++   +  V   +  Y  +  +  + + +  +L  H+ G+P+ FF  +  G 
Sbjct: 67  MPLAVIGLML---VRGVTSYISSYFISWVSGNVVMSMRRRLFSHMMGMPVAFFDQQSTGT 123

Query: 258 IVTRVR-ELDTIREFLTGSMFTLTVELLFMFVFLYVMSLLSAPLTGLFIATVPCYVLLAW 316
           +++R+  + + +    + ++ T+  E   +     +M   S  L+ + I   P       
Sbjct: 124 LLSRITYDSEQVASSSSSALVTVVREGASIVGLFVMMFYYSWQLSIILIVLAPVVSFAIR 183

Query: 317 WLTPRMQAAIEKQFSHAAANTSFLTETVAGSETLKSLAVEPRFIRRWDEQTEKMVTTGYD 376
           +++ R +   +   +     T+   + + G + +     +     R+D  + +M   G  
Sbjct: 184 YVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEIESERFDRVSNRMRQQGMK 243

Query: 377 VQQLNNRSNHLVQLLQKITSVAILWLGATEVLSLEMTIGQLIAFNMMTNHIAQPLARMVE 436
           +   ++ S+ ++QL+  +    IL+  +   +   +T G +         + +PL  +  
Sbjct: 244 LVSASSISDPIIQLIASLALAFILYAASFPSVMQTLTAGTITVVFSSMIALMRPLKSLTN 303

Query: 437 LWGQFIQTRVAIEKLGDMLNLPVEQHTGSDNVT-ISGAISFKNILFRYQPDIPPTINDLS 495
           +  QF +   A + L  +L+   E  +GS  +    G + F+ + F Y     P + +++
Sbjct: 304 VNAQFQRGMAACQTLFSILDSKQETDSGSRTIERAKGDVEFRQVTFTYPGRDVPALQNIN 363

Query: 496 LDIRAGETLGVVGTSGSGKSTLARLLLRLYSPEQGSITIDGIPLNHINVQQLRQRVGVVL 555
           L I  G+T+ +VG SGSGKST+A L+ R Y  +QG I IDG  L    ++ LR +V +V 
Sbjct: 364 LSIPEGKTVALVGRSGSGKSTIASLMTRFYDIQQGEILIDGHDLREYTLRSLRNQVALVS 423

Query: 556 QENFLFHKSVSENIAQSKPEA-SLEEIIEAAKLSGAHDFILKLPMGYDTVLAEGGQSLSG 614
           Q   LF+ +V+ NIA ++ E  S E+I +AA ++ A DFI K+  G DTV+ E G  LSG
Sbjct: 424 QNVHLFNDTVANNIAYARAEHYSREDIEKAAIMAHAMDFIKKMDNGLDTVIGENGVLLSG 483

Query: 615 GQRQRLAIARTLLSDPKVLILDEATSALDDESQAVIQANMASIARGRTVITIAHRLSTVR 674
           GQRQR+AIAR LL D  +LILDEATSALD ES+  IQA +  + + RT + IAHRLST+ 
Sbjct: 484 GQRQRIAIARALLRDCPILILDEATSALDTESEHAIQAALDELQKNRTSLVIAHRLSTIE 543

Query: 675 DCDRIIVLHQGTIVEQGSHQQLLAYGKQYKQLWQLQ 710
             D I+V+  G IVE+GSH+ LLA+   Y QL ++Q
Sbjct: 544 KADEIVVVEDGHIVERGSHKVLLAHKGAYAQLHKMQ 579