Pairwise Alignments

Query, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 599 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  269 bits (688), Expect = 3e-76
 Identities = 189/577 (32%), Positives = 302/577 (52%), Gaps = 13/577 (2%)

Query: 154 FLQHKRVLSEILLFSFVLQILALIS-PLFFQVVMDKVLVHQAWSTLDVLVFGLVITGVIE 212
           +L+  R L    LF+ VL     ++ PL  + ++D          ++     L+   V+ 
Sbjct: 24  YLRRYRGLMAAALFALVLSSATTLALPLAVRRIIDHGFQTPDGGMINSYFAMLLAIAVVL 83

Query: 213 VVLRGLREYQYAHTANRIDIQLGLKLVQHLFGLPLMFFKSRQVGAIVTRVRELDTIR-EF 271
            +   +R Y       R+   L   +  HL  L   FF S + G + +R+   DT++   
Sbjct: 84  ALASAMRYYYVMTIGERVVADLRRDVFAHLTTLSQQFFDSNRSGELTSRLTA-DTVQIRS 142

Query: 272 LTGSMFTLTVELLFMFVFLYVMSLLSAP-LTGLFIATVPCYV--LLAWWLTPRMQAAIEK 328
             GS  ++ +  + M      M + ++P L+GL +  +P  V  L+A+  + R ++   +
Sbjct: 143 AFGSSASVALRNIIMCCGAVAMMIYTSPGLSGLALLAIPFIVFPLIAFGRSVRARSRTTQ 202

Query: 329 QFSHAAANTSFLTETVAGSETLKSLAVEPRFIRRWDEQTEKMVTTGYDVQQLNNRSNHLV 388
                A + ++ +ET+A S T++S   E     R+    E             +    + 
Sbjct: 203 DT--LANSAAYASETIAASRTVQSFNAEVLANARYGASVEAAYQGARAAIGARSVLTAVA 260

Query: 389 QLLQKITSVAILWLGATEVLSLEMTIGQLIAFNMMTNHIAQPLARMVELWGQFIQTRVAI 448
             L   + V ILW GA  VL+  MT G L  F + +   A  L ++ E+WG+  Q   A 
Sbjct: 261 IALVFGSVVGILWYGAQNVLAGSMTAGTLGQFVLYSVIAASGLGQLSEVWGELAQAGGAA 320

Query: 449 EKLGDMLN--LPVEQHTGSDNVTIS--GAISFKNILFRYQPDIP-PTINDLSLDIRAGET 503
           E+L ++LN   PV +      +     G   F N+ F Y      P ++ LSL + AGET
Sbjct: 321 ERLSELLNERSPVAEPAAPVAMPQPPRGEAEFDNVDFVYPLATGRPIVSGLSLKVAAGET 380

Query: 504 LGVVGTSGSGKSTLARLLLRLYSPEQGSITIDGIPLNHINVQQLRQRVGVVLQENFLFHK 563
           + +VG SG+GKST+  LL+R Y P+QG ITIDG+ + ++++  LR R+ +V Q+  +F  
Sbjct: 381 VAIVGPSGAGKSTVFSLLMRFYDPQQGRITIDGVDIRNVSLADLRARLSIVPQDVAIFAS 440

Query: 564 SVSENIAQSKPEASLEEIIEAAKLSGAHDFILKLPMGYDTVLAEGGQSLSGGQRQRLAIA 623
           S+ +NIA  +PEA+ E++  AA  + A  FI +L  GYDT + E G +LSGGQRQR+AIA
Sbjct: 441 SIHDNIAFGRPEATREDVRAAAIAAQADGFIERLGDGYDTQVGERGVTLSGGQRQRIAIA 500

Query: 624 RTLLSDPKVLILDEATSALDDESQAVIQANMASIARGRTVITIAHRLSTVRDCDRIIVLH 683
           R +L D  +L+LDEATSALD ES+ ++Q  +  + + RT I IAHRL+TV   DRI+V+ 
Sbjct: 501 RAILRDAPILLLDEATSALDAESETLVQKALDELMKTRTTIVIAHRLATVLKADRILVMD 560

Query: 684 QGTIVEQGSHQQLLAYGKQYKQLWQLQQELKQEEASA 720
           +G I+E+G+HQ L+     Y +L +LQ +   +E  A
Sbjct: 561 EGRIIEEGTHQSLIRQNGLYARLARLQFQTGPDELRA 597