Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., Type I secretion system membrane fusion protein PrsE from Xanthobacter sp. DMC5

 Score = 95.5 bits (236), Expect = 3e-24
 Identities = 107/435 (24%), Positives = 185/435 (42%), Gaps = 19/435 (4%)

Query: 48  RPPSPFARVTALTLSLGVLAALL---WAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRL 104
           RPPS +  V  L  +L  +  L    WA   ++D    A G + V  + QV+Q  E   +
Sbjct: 17  RPPSGYRSVALLGYALIAVTFLGFGGWAAMARVDGAVVAPGVIGVESKRQVVQHLEGGIV 76

Query: 105 LSIHVRDGQRVEKGAPLLTLD-TLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTHDP 163
            +I V++GQ V +   L  LD T     D   L  +    T E        +   +T  P
Sbjct: 77  AAILVQEGQTVRRDETLFRLDPTQSRANDEAALAQRRAALTLEARLVAERDDAPAITFPP 136

Query: 164 MFTAL---PAEQQALIHE--NYLSEKNEFDSTLASITAEM-KVNRTSQAARQSDIHALLQ 217
               L   PA ++A+  +   +   +  F S +  +   + ++    +   Q    A  Q
Sbjct: 137 ELLELARVPAVREAMADQIAQFRDRRAAFQSQIDILNGRIVQLGHELEGLAQERASARQQ 196

Query: 218 LTENISQRLAARKKLNQVKVIG--HVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLE 275
           L   +   L A ++L +  ++    V  LE+EK  L+    V +  A+    +      +
Sbjct: 197 LAF-VEDELTAVRELERKHLVNKSRVSSLEREKARLDGL--VGRNIADEAKARGSIGEQK 253

Query: 276 ERLTGFKAQKQREWLEKRRQARLQLASLNQELSKVREREQLEIIRSPVDGTVQQLS--VY 333
            ++     Q+  +   +    R +LA L +++   R   +   IR+P  G VQ ++  +Y
Sbjct: 254 MQIVQLTQQRAEDVGSQLLDIREKLAELKEKVQVTRSVLERIEIRAPSGGIVQNINPRIY 313

Query: 334 TLGAVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAE 393
           T+GAV++P   L+ IVP +     E ++  +D+  +   ++V V+  AF       +   
Sbjct: 314 TVGAVVRPGDTLLEIVPVDAPLVVEARVPVQDIDRLDLHEAVEVRFPAFHGRTTPMVLGH 373

Query: 394 LLSISRDSTTDEQLGL-VFPAQIQLKTNHIMIDGQTVELTPGMSVVAEIKTDKRRVIDYL 452
           L S+SRD   DE      F A++ +    +  D ++  L PGM       T  R V+ YL
Sbjct: 374 LASVSRDRLVDETTHQPYFLARVGVDETDVPADLRS-RLQPGMDAEVAFHTGSRTVMSYL 432

Query: 453 LSPIQEYQAEALRER 467
           L P+ +  A A  ER
Sbjct: 433 LRPLADAMARAFTER 447