Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., Type I secretion membrane fusion protein, HlyD family @ Type I secretion system, membrane fusion protein LapC from Variovorax sp. SCN45

 Score =  141 bits (355), Expect = 5e-38
 Identities = 124/428 (28%), Positives = 189/428 (44%), Gaps = 59/428 (13%)

Query: 49  PPSPFARVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIH 108
           PP P A +    ++  + A L WA++ KLD  +T TG++V S R Q+IQS E   L+ + 
Sbjct: 41  PPLPGASLVVWIVAAMLAALLAWAWFFKLDEVSTGTGKVVPSSREQMIQSLEGGILVDLK 100

Query: 109 VRDGQRVEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTHDPMFTAL 168
           VR+G  V  G  L  LD       +    S+         R    +N   L         
Sbjct: 101 VREGDIVSAGQVLAQLDRTKTESTVQESASRVRAALAMSARLTAEVNGTPLVFPDEVRGE 160

Query: 169 PA---EQQALIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQR 225
           P     + AL    Y S + +  S+LA +   + + R             L LTE +  R
Sbjct: 161 PGLVRTETAL----YQSRREQLASSLAGVNQALVLMRRE-----------LALTEPLVSR 205

Query: 226 LAARKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQK 285
            AA                  + E+L  +RQ+ +   +   L+SQY             K
Sbjct: 206 GAA-----------------SDVEVLRLKRQINEAETKAADLRSQYYV-----------K 237

Query: 286 QREWLEKRRQARLQLASLNQELSKVREREQLEI---IRSPVDGTVQQLSVYTLGAVLQPA 342
            RE L K        A +  + S  R R          SPV G V+ + V T+G VL P 
Sbjct: 238 AREDLAKAN------AEIEAQRSVTRGRSDSLTRLTFASPVRGIVKDIVVTTVGGVLPPG 291

Query: 343 QNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDST 402
             LM IVP +     E +I  +DV F++PGQ  TVKV A+ Y  YG +  ++ +IS D+ 
Sbjct: 292 GKLMEIVPLDEKLLVEARISPRDVAFIHPGQDATVKVTAYDYAIYGGLPGKVTTISPDTI 351

Query: 403 TDEQLGLVFPAQIQLKT--NHIM-IDGQTVELTPGMSVVAEIKTDKRRVIDYLLSPIQEY 459
            D+    V+  ++ ++T  +H+    G++  + PGM    +I T  + V+DYL+ P+ + 
Sbjct: 352 QDDVKRDVYYYRVYIRTDADHLKNRSGRSFPIVPGMIATVDIHTGSKTVLDYLIKPLNK- 410

Query: 460 QAEALRER 467
            +EALRER
Sbjct: 411 ASEALRER 418