Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., Type I secretion membrane fusion protein, HlyD family @ Type I secretion system, membrane fusion protein LapC from Variovorax sp. SCN45

 Score =  125 bits (315), Expect = 2e-33
 Identities = 104/433 (24%), Positives = 199/433 (45%), Gaps = 25/433 (5%)

Query: 46  AQRPPSPFARVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLL 105
           AQ  P    R   +  ++ VLA +   +   ++    A GR++ S R + IQ  E   + 
Sbjct: 18  AQTSPQGRRRQWIIGGAVAVLALVGLGF--PMETVVVAPGRVIPSDRVKSIQHLEGGIVS 75

Query: 106 SIHVRDGQRVEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTHDPMF 165
           S+ V++G +V+ G PL+ +D  G   ++  L ++        +R       Q L  +   
Sbjct: 76  SVLVKEGDKVKTGQPLVEIDLGGSGLNLEELTARYAATQATRVRLMAESRGQPLRRESF- 134

Query: 166 TALPAEQQALIHEN--YLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENIS 223
            A   ++     E   Y +   E    +A   + ++  R+ +  +Q+ +  L    E + 
Sbjct: 135 -AKDIDEGVFEGETGAYQARALEQRGVMAGAVSGLEQARSKKLEQQAKVKGLGDRLELMQ 193

Query: 224 QRLAARKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKA 283
           + L   ++L   K++G VE LE+       +RQ    R+EL V +    S +  +T  +A
Sbjct: 194 KELEISEQLLSEKLVGQVEVLEK-------RRQAESVRSELAVARQGVVSADAAITEAQA 246

Query: 284 QKQREWLEKRRQA-------RLQLASLNQELSKVREREQLEIIRSPVDGTVQQLSVYTLG 336
           +        RR+A         Q ASL+++L++ R +    ++++P DG V+ L   + G
Sbjct: 247 KMAEAEGRYRRRASDELATVERQFASLSEDLARARTQRSRTVVKAPSDGIVKGLRNSSPG 306

Query: 337 AVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLS 396
            V++P ++++ +VP+      E ++   D GF+  GQ+  VK+ A+ Y RYG +D ++  
Sbjct: 307 WVVKPGESILEVVPDEDEIMVEARLNPNDRGFIEVGQTARVKITAYDYLRYGAVDGKVKL 366

Query: 397 ISRDSTTDEQLGLVFP---AQIQLKTNHIMIDGQTVELTPGMSVVAEIKTDKRRVIDYLL 453
           ++ D+  D  +    P     I +  +H+  D     +T GM    +++      I Y+L
Sbjct: 367 VAADADRDPAISNGAPYYRLLISMSQSHVGRDEN--RITAGMESEVDLRVGTDPFIWYIL 424

Query: 454 SPIQEYQAEALRE 466
            P+ + + EA RE
Sbjct: 425 RPVLKLRREAFRE 437