Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 494 a.a., RTX toxin transporter, determinant D from Variovorax sp. SCN45

 Score =  250 bits (638), Expect = 9e-71
 Identities = 154/440 (35%), Positives = 244/440 (55%), Gaps = 12/440 (2%)

Query: 38  FLPAHLALAQRPPSPFARVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQ 97
           FLPA L+L   P  P  R  A  L    L AL W+ +G++D+ A A G+++VS R+++IQ
Sbjct: 57  FLPAALSLQDTPVHPAPRRLAYALIALFLIALTWSIFGQIDIVAVAPGKIIVSERTKIIQ 116

Query: 98  SYEQSRLLSIHVRDGQRVEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTL---L 154
             E S +  + VRDG  VE G PL+ LD    N D T +  Q +   +E++R R L   L
Sbjct: 117 PLEVSVVKRVLVRDGDHVEAGQPLVELDPTTANADKTSIDEQLKSVQSEVLRTRALQQAL 176

Query: 155 NDQLLTHDP-MFTALPAEQQAL----IHENYLSEKNEFDSTLASITAEMKVNRTSQAARQ 209
           N    +  P +   +P     +           E ++  + LA  +AE+   R ++ A  
Sbjct: 177 NATTASRAPELGKNIPGSWSEVDIDAARAQLSDEWSDITAKLAKASAEIN-RRQAEIATV 235

Query: 210 SDIHALLQLTENISQRLAA--RKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVL 267
            ++ A L+ T  I+++  A   +  NQ  +  H    ++ +E +E +R +A QRA L   
Sbjct: 236 REMVAKLETTVPIARQREADFHQLANQGFMSSHANQ-DRTRERIELERDLATQRARLAEA 294

Query: 268 KSQYESLEERLTGFKAQKQREWLEKRRQARLQLASLNQELSKVREREQLEIIRSPVDGTV 327
            +     E     + A+ +     +   A L+     Q+L+K  +RE+L  +++PV GTV
Sbjct: 295 NATLRESENTRAAYIAETKHSLRTREAAAELKRQQGTQDLAKAGQRERLTTLKAPVAGTV 354

Query: 328 QQLSVYTLGAVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRY 387
           QQL+ +T G V+  AQ LM+IVP+     AEV + NKD+GFV P Q   +K++ FPYTRY
Sbjct: 355 QQLAAHTEGGVVTEAQPLMVIVPDGAQVTAEVTLDNKDIGFVSPMQEAAIKLETFPYTRY 414

Query: 388 GTIDAELLSISRDSTTDEQLGLVFPAQIQLKTNHIMIDGQTVELTPGMSVVAEIKTDKRR 447
           GT++A + +++ D+  DE+ G +FP  + L    I +D + ++L+PGM++ AEIKT KRR
Sbjct: 415 GTVNATVKTVTADAVNDEKRGAIFPVTLNLNDTTIDVDEKPIKLSPGMNLTAEIKTGKRR 474

Query: 448 VIDYLLSPIQEYQAEALRER 467
           VI++LLSP+Q    E++RER
Sbjct: 475 VIEFLLSPVQRASGESMRER 494