Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

 Score = 59.7 bits (143), Expect = 2e-13
 Identities = 78/371 (21%), Positives = 135/371 (36%), Gaps = 116/371 (31%)

Query: 44  ALAQRPPSPFARVTALTLSLGVLA--ALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQ 101
           +LAQ  P       A  + LGVL   A+L+  W +          L    R++ + S   
Sbjct: 13  SLAQLRPPRLVTTVAWLILLGVLLVLAILFVPWQQTAQGGGQVTTLSAQDRARDVSSLVS 72

Query: 102 SRLLSIHVRDGQRVEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTH 161
            R+   +VRDG  V  G P++                                  +++  
Sbjct: 73  GRVAEFYVRDGDHVRAGDPIV----------------------------------RVVDV 98

Query: 162 DPMFTALPAEQQALIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTEN 221
           DP F A  A ++A +     + +       A  TA + VNRTSQ                
Sbjct: 99  DPDFLARLAGEKAQVEAQIAAVQQ------ARATAMIDVNRTSQL--------------- 137

Query: 222 ISQRLAARKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGF 281
            ++ LAAR+   Q ++           ++ +   ++A+ RA+L                 
Sbjct: 138 YAEGLAARRDYEQTQI-----------KVADVDAKLAEARAKL----------------- 169

Query: 282 KAQKQREWLEKRRQARLQLASLNQELSKVREREQLEIIRSPVDGTVQQLSVYTLGAVLQP 341
                       +Q  ++LA           +   +I+ +P +G VQ L+    GA++  
Sbjct: 170 ------------KQIEIKLA-----------QSSAQIVSAPREGRVQDLNAAAGGALISS 206

Query: 342 AQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRY--------GTIDAE 393
              L  I PEN  +  E+ +  +DV  V PG+SV ++ + FP  ++        G  D +
Sbjct: 207 GTVLATIAPENITRAVELYVDGRDVPLVEPGRSVRLEFEGFPAFQFSGWPAFAVGIYDGQ 266

Query: 394 LLSISRDSTTD 404
           + S+     TD
Sbjct: 267 VRSVDPTPRTD 277