Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., HlyD family secretion protein from Pseudomonas putida KT2440

 Score =  115 bits (287), Expect = 4e-30
 Identities = 106/429 (24%), Positives = 184/429 (42%), Gaps = 34/429 (7%)

Query: 56  VTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQRV 115
           +T + ++ G+     WA +  L      TG + V    + +Q  E   +  +H RDG  V
Sbjct: 28  LTVVFVTFGIFGT--WAAFAPLSNAVHGTGVVTVQNYRKTVQHLEGGIVKELHARDGDLV 85

Query: 116 EKGAPLLTLDTLGVNQDITRLVSQAEFQTNELI--RYRTLLNDQLLTHDPMFTALPA--- 170
           +KG PL+ LD        ++L ++ E   N+LI  RY+     +L        ++P+   
Sbjct: 86  KKGDPLIVLDE-------SQLSAEYESTRNQLIVARYKEA---RLRAERDGLDSIPSVIM 135

Query: 171 --EQQALIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQ-------LTEN 221
                    E    E+  F +   S+  E+ VNR      Q  I  L         L ++
Sbjct: 136 EGTDSDRAQEALAGEQQVFKARHDSLLGEISVNRERIQQMQQQIAGLNDMIRTKAGLNKS 195

Query: 222 ISQRLAARKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGF 281
            S  +   K+L     + +   LEQE++L   + +VA  ++ +   K Q    E ++   
Sbjct: 196 YSGEIKQLKELLAEGFVDNQRLLEQERKLDMLKTEVADHQSSITKTKLQIGETELQIVQL 255

Query: 282 KAQKQREWLEKRRQARLQLASLNQELSKVREREQLEIIRSPVDGTVQQLSVYTLGAVLQP 341
           K +   +  ++    + Q+  L ++ + +R+R    +IR+P  G V  + V+T+G V+  
Sbjct: 256 KKKFDADVAKELSDVQAQVFDLQEKEAALRDRLSRVVIRAPESGMVLDMKVHTIGGVVSA 315

Query: 342 AQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDS 401
           A  L+ IVP       E ++  +D+  +  G++  V+  AF       I+ +L  IS DS
Sbjct: 316 ATPLLDIVPAQSDLVVEAKVAPRDIDRLELGKTADVRFSAFNQATTPVIEGKLTRISADS 375

Query: 402 TTDEQLGLVFPAQIQLKTNHIMIDGQ----TVELTPGMSVVAEIKTDKRRVIDYLLSPIQ 457
             +E+ G     Q  L    +  DG       +L PGM     I    R ++ YLL P +
Sbjct: 376 LVEERSG----DQYYLVRVKVTEDGMKKLGNRKLQPGMPAEVLINAGDRTMLQYLLKPAR 431

Query: 458 EYQAEALRE 466
              AE+L E
Sbjct: 432 NMFAESLIE 440