Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Protein secretion ABC efflux system, membrane fusion protein from Pseudomonas putida KT2440

 Score =  139 bits (350), Expect = 2e-37
 Identities = 117/440 (26%), Positives = 210/440 (47%), Gaps = 62/440 (14%)

Query: 39  LPAHLALAQRPPSPFARVTALTLSLGVLAALL-WAYWGKLDVQATATGRLVVSGRSQVIQ 97
           LPA     Q   + F     +TL   +LAA L WA W ++   +T TG+++ S R QVIQ
Sbjct: 6   LPASYLDGQDDQAVFRAGRIITLCALMLAAFLAWAAWFEVTEVSTGTGKVIPSSREQVIQ 65

Query: 98  SYEQSRLLSIHVRDGQRVEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQ 157
           S+E   +  + V +G  VE+G  L  LD       +    S+A+++     + R  L  +
Sbjct: 66  SFEGGIVAQMSVAEGDLVERGQVLAQLDPTKTASSVGE--SEAKYRAARASQAR--LQAE 121

Query: 158 LLTHDPMFTALPAEQQALIHEN---YLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHA 214
           +      F     +   LI      Y + +   + TLA I   +++ R+           
Sbjct: 122 VTGKPLTFPESLRDSPDLIDAETALYQTRRRGLEQTLAGIQDSLQLVRSE---------- 171

Query: 215 LLQLTENISQRLAARKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESL 274
            L++TEN+++  A+    ++V+VI                 ++ +QR+ELE+  ++  S 
Sbjct: 172 -LKITENLAKMGAS----SRVEVI-----------------RLNRQRSELELKANEARS- 208

Query: 275 EERLTGFKAQKQREWLEKRRQARLQLASLNQELSKVREREQLEI----IRSPVDGTVQQL 330
                        ++L + R+   + ++    LS+V       +    +RSPV G V+ +
Sbjct: 209 -------------DYLVRAREELAKASAEADALSEVIRGRSDSLTRLTLRSPVRGIVKDI 255

Query: 331 SVYTLGAVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTI 390
            V TLG V+QP   +M IVP +     E +I  +D+ F++P Q+  VK+ A+ Y+ YG +
Sbjct: 256 EVNTLGGVVQPGGQVMKIVPMDERLLIETRIAPRDIAFIHPDQAAKVKISAYDYSVYGGL 315

Query: 391 DAELLSISRDSTTDEQLGLVFPAQIQLKTNHIMID---GQTVELTPGMSVVAEIKTDKRR 447
           D +++ IS D+  DE    ++  ++ ++T    +    G+   + PGM    +I+T ++ 
Sbjct: 316 DGKVVGISPDTLQDEVKPEIYYYRVFIRTEQDSLQNKAGKRFAIVPGMIATVDIRTGEKT 375

Query: 448 VIDYLLSPIQEYQAEALRER 467
           ++DYL+ P+   + EALRER
Sbjct: 376 ILDYLIKPLNRAK-EALRER 394