Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., HlyD family secretion protein from Pseudomonas putida KT2440

 Score =  154 bits (389), Expect = 6e-42
 Identities = 107/415 (25%), Positives = 190/415 (45%), Gaps = 3/415 (0%)

Query: 55  RVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQR 114
           R+T   + L  +  ++WA    +D      G+ + S + Q IQ+ E   +  I  ++GQ 
Sbjct: 45  RLTIWGVILFFVFLIVWASVAPIDEVTRGEGKAIPSSKVQKIQNLEGGIVAEIFAKEGQI 104

Query: 115 VEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTHDPMFTALPAEQQA 174
           VE G PLL LD      ++    +        + R    + D+ L  D         Q A
Sbjct: 105 VEVGQPLLRLDETRFASNVGETEADRLAMALRVERLSAEVEDRPLIIDEKLRKAAPNQAA 164

Query: 175 LIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQRLAARKKLNQ 234
                Y S + +    +  +  ++   +       S         E + + ++  + L  
Sbjct: 165 SEESLYQSRRQQLQDEIGGLQQQLVQRQQELREYSSKRTQYANSLELLRKEISMSEPLVA 224

Query: 235 VKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQKQREWLEKRR 294
              I  VE L   +  +E + Q+      +   ++    ++ ++   + + + E L +  
Sbjct: 225 TGAISQVEVLRLRRAEVENRGQLDSTALAIPRAEAAIREVQSKIEETRGKFRSEALTQLN 284

Query: 295 QARLQLASLNQELSKVREREQLEIIRSPVDGTVQQLSVYTLGAVLQPAQNLMIIVPENRV 354
           +AR +L         + +R    ++ SPV G V+QL V T+G V+QP  +++ +VP +  
Sbjct: 285 EARTELNKATATSKALDDRVHRTLVTSPVRGIVKQLLVNTIGGVIQPGSDIIEVVPLDDT 344

Query: 355 QQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDSTTDEQLGLVFPAQ 414
              E +IL KD+ F++PGQ  TVK  A+ YT YG + A+L  I  D+ TDE     +   
Sbjct: 345 LVIEAKILPKDIAFLHPGQEATVKFTAYDYTIYGGLKAKLEQIGADTITDEDKKTTY-YL 403

Query: 415 IQLKT--NHIMIDGQTVELTPGMSVVAEIKTDKRRVIDYLLSPIQEYQAEALRER 467
           I+L+T  +H+  D + + + PGM    +I T K+ ++ YLL PI + ++EALRER
Sbjct: 404 IKLRTDRSHLGTDEKPLLIIPGMVATVDIMTGKKTIMSYLLKPIMKARSEALRER 458